miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 143124 0.71 0.654262
Target:  5'- uGGCugCCGgGAgGGGcCGCGGauggGCGGg -3'
miRNA:   3'- -CCGugGGCgUUgCUCaGUGCCg---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 109406 0.71 0.654262
Target:  5'- --gACCCgGCGAUGGGUCGuggGGCGCGGc -3'
miRNA:   3'- ccgUGGG-CGUUGCUCAGUg--CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 51541 0.71 0.654262
Target:  5'- aGCgACCCGCAcuACGAGUaCAucCGGCACu- -3'
miRNA:   3'- cCG-UGGGCGU--UGCUCA-GU--GCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 3003 0.7 0.664222
Target:  5'- cGGCGgCCGcCAGCGcGUCGgCGGCGucCGGu -3'
miRNA:   3'- -CCGUgGGC-GUUGCuCAGU-GCCGU--GCC- -5'
5562 3' -57.2 NC_001806.1 + 76804 0.7 0.664222
Target:  5'- cGCACCCGCuaAGCGcGgccaGCGGCgACGGc -3'
miRNA:   3'- cCGUGGGCG--UUGCuCag--UGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 151535 0.7 0.664222
Target:  5'- cGGCGCCCGUGGgcccgggcggcCGGGg-GCGGCGgGGg -3'
miRNA:   3'- -CCGUGGGCGUU-----------GCUCagUGCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 140036 0.7 0.674158
Target:  5'- aGCGCCCGgAGCGc--CACGGC-CGGc -3'
miRNA:   3'- cCGUGGGCgUUGCucaGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 95617 0.7 0.674158
Target:  5'- aGGUgcuGCCCGCGACGuucgccgcGGUCgccaacggcuuuGCGGCGCGc -3'
miRNA:   3'- -CCG---UGGGCGUUGC--------UCAG------------UGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 132755 0.7 0.678123
Target:  5'- cGGCagccggaugccuccuGCCCGCGguGCGGGagGCGGUggcGCGGu -3'
miRNA:   3'- -CCG---------------UGGGCGU--UGCUCagUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 105093 0.7 0.684061
Target:  5'- cGGUAUCUGCAgggcgGCGGGUCGUGGCG-GGa -3'
miRNA:   3'- -CCGUGGGCGU-----UGCUCAGUGCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 10107 0.7 0.684061
Target:  5'- cGUACUCGCGGCG---CACGGCGCGu -3'
miRNA:   3'- cCGUGGGCGUUGCucaGUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 37772 0.7 0.684061
Target:  5'- gGGCGCCuuuCGCucCGGGgcCGgGGCGCGGg -3'
miRNA:   3'- -CCGUGG---GCGuuGCUCa-GUgCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 125691 0.7 0.684061
Target:  5'- cGcCACCUGC-GCGGGUUGCuGCGCGGc -3'
miRNA:   3'- cC-GUGGGCGuUGCUCAGUGcCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 5059 0.7 0.684061
Target:  5'- gGGCccCCCGCucgucGCG-GUCugGGCuCGGg -3'
miRNA:   3'- -CCGu-GGGCGu----UGCuCAGugCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 6153 0.7 0.692939
Target:  5'- cGGCGCCgGCcacgaacGACGGGa-GCGGCuGCGGa -3'
miRNA:   3'- -CCGUGGgCG-------UUGCUCagUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 82547 0.7 0.693923
Target:  5'- uGGCGCCCGCGAUGGGagcgUGCGuGCccGCGu -3'
miRNA:   3'- -CCGUGGGCGUUGCUCa---GUGC-CG--UGCc -5'
5562 3' -57.2 NC_001806.1 + 114552 0.7 0.693923
Target:  5'- cGGC-CCUGC-GCGAccuGUCGCGGCA-GGu -3'
miRNA:   3'- -CCGuGGGCGuUGCU---CAGUGCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 143388 0.7 0.693923
Target:  5'- cGGCGacaacgcucCCCgGCGGcCGGGUCGCGGCucuuacgaGCGGc -3'
miRNA:   3'- -CCGU---------GGG-CGUU-GCUCAGUGCCG--------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 65706 0.7 0.703736
Target:  5'- cGGgGCCCGCGcuucgACGGGagaggauGCGGCugGGc -3'
miRNA:   3'- -CCgUGGGCGU-----UGCUCag-----UGCCGugCC- -5'
5562 3' -57.2 NC_001806.1 + 72488 0.7 0.703736
Target:  5'- cGCACCCccuGCGggGCGAGaUCGCGGgcCugGGg -3'
miRNA:   3'- cCGUGGG---CGU--UGCUC-AGUGCC--GugCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.