miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 148169 0.72 0.554937
Target:  5'- cGGCGCCUcuGCGugGGGgggCGCGGgGCGu -3'
miRNA:   3'- -CCGUGGG--CGUugCUCa--GUGCCgUGCc -5'
5562 3' -57.2 NC_001806.1 + 23330 0.72 0.554937
Target:  5'- cGGCgGCCCGCGacccccgaagACGAagaagaGCGGCGCGGa -3'
miRNA:   3'- -CCG-UGGGCGU----------UGCUcag---UGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 41361 0.72 0.563762
Target:  5'- cGGCAUCCaggccgccaggggGCAucACGGGgccCugGGCGCGGa -3'
miRNA:   3'- -CCGUGGG-------------CGU--UGCUCa--GugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 61764 0.72 0.564744
Target:  5'- cGCACCCGCGcuuccaACcAGUCcaccuUGGCGCGGa -3'
miRNA:   3'- cCGUGGGCGU------UGcUCAGu----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 4710 0.72 0.564744
Target:  5'- cGCGCCgCGUAGCGGGgccucccguUCGCGGCccCGGg -3'
miRNA:   3'- cCGUGG-GCGUUGCUC---------AGUGCCGu-GCC- -5'
5562 3' -57.2 NC_001806.1 + 140689 0.72 0.584487
Target:  5'- cGGCGCCCGCGugccgcgcuggaACGcccccGUCuguggUGGCGCGGg -3'
miRNA:   3'- -CCGUGGGCGU------------UGCu----CAGu----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 79559 0.72 0.584487
Target:  5'- gGGCcCCCGCGACGAcUUcCGGCGCu- -3'
miRNA:   3'- -CCGuGGGCGUUGCUcAGuGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 3449 0.72 0.60436
Target:  5'- aGGCACUcgacggccaCGCGGCcGGcCugGGCGCGGc -3'
miRNA:   3'- -CCGUGG---------GCGUUGcUCaGugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 22649 0.72 0.60436
Target:  5'- cGGUGCCCGC--CGGG-UACGGCgccGCGGg -3'
miRNA:   3'- -CCGUGGGCGuuGCUCaGUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 61816 0.72 0.60436
Target:  5'- uGGUACCgGCcACGuacUCGCGGCGCGc -3'
miRNA:   3'- -CCGUGGgCGuUGCuc-AGUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 2828 0.71 0.614329
Target:  5'- gGGC-CCCggggGCGugGAGgggggCGCgGGCGCGGg -3'
miRNA:   3'- -CCGuGGG----CGUugCUCa----GUG-CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 4171 0.71 0.614329
Target:  5'- aGCACCCGCcccgggGGCGGGggCcCGGCGcCGGg -3'
miRNA:   3'- cCGUGGGCG------UUGCUCa-GuGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 95336 0.71 0.624311
Target:  5'- gGGC-CCCGaCGACGAcggggaccguGUCGCcguagaggaaggGGCACGGg -3'
miRNA:   3'- -CCGuGGGC-GUUGCU----------CAGUG------------CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 21853 0.71 0.634299
Target:  5'- cGCGCCCaagccccgggcgGCGGCGAGgaccccCGCGGCcuccGCGGg -3'
miRNA:   3'- cCGUGGG------------CGUUGCUCa-----GUGCCG----UGCC- -5'
5562 3' -57.2 NC_001806.1 + 143784 0.71 0.634299
Target:  5'- -aCACCCGCGACGGGgggACGGaggggACGGa -3'
miRNA:   3'- ccGUGGGCGUUGCUCag-UGCCg----UGCC- -5'
5562 3' -57.2 NC_001806.1 + 20186 0.71 0.644285
Target:  5'- cGGgGCCgGCGcgGAGUCG-GGCACGGc -3'
miRNA:   3'- -CCgUGGgCGUugCUCAGUgCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 147784 0.71 0.654262
Target:  5'- gGGgGCCCGgGGCGGGgggCGgagccUGGCAUGGg -3'
miRNA:   3'- -CCgUGGGCgUUGCUCa--GU-----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 143124 0.71 0.654262
Target:  5'- uGGCugCCGgGAgGGGcCGCGGauggGCGGg -3'
miRNA:   3'- -CCGugGGCgUUgCUCaGUGCCg---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 109406 0.71 0.654262
Target:  5'- --gACCCgGCGAUGGGUCGuggGGCGCGGc -3'
miRNA:   3'- ccgUGGG-CGUUGCUCAGUg--CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3150 0.71 0.654262
Target:  5'- gGGC-CCCgGCGACcAGgcUCACGGCGCGc -3'
miRNA:   3'- -CCGuGGG-CGUUGcUC--AGUGCCGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.