miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 116965 0.66 0.890376
Target:  5'- uGGCuCCCGUgguuCGGGugugcaccuuUgACGGCGCGGc -3'
miRNA:   3'- -CCGuGGGCGuu--GCUC----------AgUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 48862 0.66 0.883008
Target:  5'- gGGCgGCCCGCGuauaaagGCGAGagCGCGGgACc- -3'
miRNA:   3'- -CCG-UGGGCGU-------UGCUCa-GUGCCgUGcc -5'
5562 3' -57.2 NC_001806.1 + 24859 0.66 0.900625
Target:  5'- cGGCACCgugcuggcgGCGGCGGGggccguggaggugCugGGgGCGGa -3'
miRNA:   3'- -CCGUGGg--------CGUUGCUCa------------GugCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3324 0.66 0.890376
Target:  5'- cGGgGCCCGC---GGGUCccucCGGcCGCGGg -3'
miRNA:   3'- -CCgUGGGCGuugCUCAGu---GCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 81935 0.66 0.874678
Target:  5'- cGGC-CCCGUAcgccucccgggaccGcCGGGUUcgGCGGCgACGGg -3'
miRNA:   3'- -CCGuGGGCGU--------------U-GCUCAG--UGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 84092 0.66 0.86968
Target:  5'- cGCugCCGCGgagGCccGUCGCGcCACGGu -3'
miRNA:   3'- cCGugGGCGU---UGcuCAGUGCcGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 109934 0.66 0.876788
Target:  5'- uGGCAaucucCCCGgGcuGCGAGgcaCACGGCcgccccACGGa -3'
miRNA:   3'- -CCGU-----GGGCgU--UGCUCa--GUGCCG------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 35569 0.66 0.86968
Target:  5'- cGGCGCCgCGCcgAACGAcGUgCGCaGCGcCGGa -3'
miRNA:   3'- -CCGUGG-GCG--UUGCU-CA-GUGcCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 3483 0.66 0.896847
Target:  5'- nGCGCCCG--GCGucGUCGuCGGCGuCGGc -3'
miRNA:   3'- cCGUGGGCguUGCu-CAGU-GCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 144958 0.66 0.86968
Target:  5'- cGGCcCCCGUGGCG-GcC-CGGCcCGGg -3'
miRNA:   3'- -CCGuGGGCGUUGCuCaGuGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 111313 0.66 0.896847
Target:  5'- uGCACCCGUcgcguucuAACGGGgg-UGGgGCGGg -3'
miRNA:   3'- cCGUGGGCG--------UUGCUCaguGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3558 0.66 0.896847
Target:  5'- cGGCggacagccGCCCcaggGCGGCGAGgaucccCGCGGCGCc- -3'
miRNA:   3'- -CCG--------UGGG----CGUUGCUCa-----GUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 21759 0.66 0.883688
Target:  5'- aGGCGCgggCCGUcgGGCGGGguccgucgagCGCGGCGcCGGc -3'
miRNA:   3'- -CCGUG---GGCG--UUGCUCa---------GUGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 22559 0.66 0.896847
Target:  5'- cGGCGCugacgggggCCGCGGgGAGcCcCGGCGcCGGc -3'
miRNA:   3'- -CCGUG---------GGCGUUgCUCaGuGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 49488 0.66 0.876788
Target:  5'- gGGCuauUuuGgGGCGGGUCGgCGGUucGCGGg -3'
miRNA:   3'- -CCGu--GggCgUUGCUCAGU-GCCG--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 138713 0.66 0.86968
Target:  5'- -aCGCCCGCAugGAGaacuaACGGCGg-- -3'
miRNA:   3'- ccGUGGGCGUugCUCag---UGCCGUgcc -5'
5562 3' -57.2 NC_001806.1 + 75008 0.66 0.86968
Target:  5'- aGCACCCGaCucCG-GaCACGGCgACGGc -3'
miRNA:   3'- cCGUGGGC-GuuGCuCaGUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 64961 0.66 0.883688
Target:  5'- cGGCGCCCGgGccGgGGGUCcCGGgGCa- -3'
miRNA:   3'- -CCGUGGGCgU--UgCUCAGuGCCgUGcc -5'
5562 3' -57.2 NC_001806.1 + 147100 0.67 0.839273
Target:  5'- cGGCcCCCGCGGCccAGaaGCaGCGCGGg -3'
miRNA:   3'- -CCGuGGGCGUUGc-UCagUGcCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 144799 0.67 0.839273
Target:  5'- aGGCcgcguacgGCCCGgGACGAGgggcccccgacCGCGGCGgucCGGg -3'
miRNA:   3'- -CCG--------UGGGCgUUGCUCa----------GUGCCGU---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.