miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 6153 0.7 0.692939
Target:  5'- cGGCGCCgGCcacgaacGACGGGa-GCGGCuGCGGa -3'
miRNA:   3'- -CCGUGGgCG-------UUGCUCagUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 7137 0.69 0.762034
Target:  5'- cGGaCcCCCGCAACGGGgugauaaugaucaaGCGGCGgGGc -3'
miRNA:   3'- -CC-GuGGGCGUUGCUCag------------UGCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 8261 0.66 0.903099
Target:  5'- cGCACCCuugGguGCGGGU---GGUACGGg -3'
miRNA:   3'- cCGUGGG---CguUGCUCAgugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 10107 0.7 0.684061
Target:  5'- cGUACUCGCGGCG---CACGGCGCGu -3'
miRNA:   3'- cCGUGGGCGUUGCucaGUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 11650 0.68 0.797292
Target:  5'- gGGuCACCguuagCGCGuaucGCGAGUCGCGGguCGc -3'
miRNA:   3'- -CC-GUGG-----GCGU----UGCUCAGUGCCguGCc -5'
5562 3' -57.2 NC_001806.1 + 12440 0.79 0.239104
Target:  5'- aGGC-CCUGCAACGGGcggCACGGCAuccCGGa -3'
miRNA:   3'- -CCGuGGGCGUUGCUCa--GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 18859 0.69 0.72318
Target:  5'- cGGaCACCUGCAgcaaACGGcacCACGuGCGCGGg -3'
miRNA:   3'- -CC-GUGGGCGU----UGCUca-GUGC-CGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 20186 0.71 0.644285
Target:  5'- cGGgGCCgGCGcgGAGUCG-GGCACGGc -3'
miRNA:   3'- -CCgUGGgCGUugCUCAGUgCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 20315 0.66 0.896847
Target:  5'- cGGUcccGCCCGCcggccaAugGGGggGCGGCaagGCGGg -3'
miRNA:   3'- -CCG---UGGGCG------UugCUCagUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 20625 0.68 0.77945
Target:  5'- cGGgGCCgGggguucgacCAACGGGcCGCGGcCACGGg -3'
miRNA:   3'- -CCgUGGgC---------GUUGCUCaGUGCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 21300 0.69 0.722215
Target:  5'- gGGCcCCCGCGGCGGG-CAccgacgcCGGCGaGGa -3'
miRNA:   3'- -CCGuGGGCGUUGCUCaGU-------GCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 21585 0.69 0.737572
Target:  5'- cGCGCCCGCcggcccagccgccGCGGagacgucGUCACGGC-CGGu -3'
miRNA:   3'- cCGUGGGCGu------------UGCU-------CAGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 21759 0.66 0.883688
Target:  5'- aGGCGCgggCCGUcgGGCGGGguccgucgagCGCGGCGcCGGc -3'
miRNA:   3'- -CCGUG---GGCG--UUGCUCa---------GUGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 21853 0.71 0.634299
Target:  5'- cGCGCCCaagccccgggcgGCGGCGAGgaccccCGCGGCcuccGCGGg -3'
miRNA:   3'- cCGUGGG------------CGUUGCUCa-----GUGCCG----UGCC- -5'
5562 3' -57.2 NC_001806.1 + 21933 0.67 0.839273
Target:  5'- uGGcCGgCCGCGacgccACGGGcccuUCACGGC-CGGg -3'
miRNA:   3'- -CC-GUgGGCGU-----UGCUC----AGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 22069 0.67 0.862369
Target:  5'- gGGCcCCCGCccccggGGCGGGUgcugUACGGCGgccUGGg -3'
miRNA:   3'- -CCGuGGGCG------UUGCUCA----GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 22133 0.67 0.84716
Target:  5'- gGGCGCCCGaGGCgGAGga--GGCGCGa -3'
miRNA:   3'- -CCGUGGGCgUUG-CUCagugCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 22559 0.66 0.896847
Target:  5'- cGGCGCugacgggggCCGCGGgGAGcCcCGGCGcCGGc -3'
miRNA:   3'- -CCGUG---------GGCGUUgCUCaGuGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 22649 0.72 0.60436
Target:  5'- cGGUGCCCGC--CGGG-UACGGCgccGCGGg -3'
miRNA:   3'- -CCGUGGGCGuuGCUCaGUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 23133 0.67 0.839273
Target:  5'- cGGgACCCGCGccugcCGAGcucCGCGGCcgccgccgccGCGGa -3'
miRNA:   3'- -CCgUGGGCGUu----GCUCa--GUGCCG----------UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.