miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 142113 0.67 0.860137
Target:  5'- aGGCGCCgGgaGugGGGUCGuCGGCgucugcuuuuugugGCGGc -3'
miRNA:   3'- -CCGUGGgCg-UugCUCAGU-GCCG--------------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 140689 0.72 0.584487
Target:  5'- cGGCGCCCGCGugccgcgcuggaACGcccccGUCuguggUGGCGCGGg -3'
miRNA:   3'- -CCGUGGGCGU------------UGCu----CAGu----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 140416 0.66 0.889717
Target:  5'- -aCACgCGCGACGGG-CAgugagggUGGCAUGGg -3'
miRNA:   3'- ccGUGgGCGUUGCUCaGU-------GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 140036 0.7 0.674158
Target:  5'- aGCGCCCGgAGCGc--CACGGC-CGGc -3'
miRNA:   3'- cCGUGGGCgUUGCucaGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 139804 0.86 0.10026
Target:  5'- cGGCACCCGC-GCGA-UCAUGGUACGGg -3'
miRNA:   3'- -CCGUGGGCGuUGCUcAGUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 138713 0.66 0.86968
Target:  5'- -aCGCCCGCAugGAGaacuaACGGCGg-- -3'
miRNA:   3'- ccGUGGGCGUugCUCag---UGCCGUgcc -5'
5562 3' -57.2 NC_001806.1 + 138446 0.66 0.903099
Target:  5'- uGGUcgugGCCCGCAACGAcGUCACu-UACGu -3'
miRNA:   3'- -CCG----UGGGCGUUGCU-CAGUGccGUGCc -5'
5562 3' -57.2 NC_001806.1 + 136969 0.75 0.425094
Target:  5'- gGGgGCCCGCgAGCGuggugcGGUCAUGGCgGCGGc -3'
miRNA:   3'- -CCgUGGGCG-UUGC------UCAGUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 135550 0.74 0.451476
Target:  5'- cGGCugCCGCAuccACcGGUCACGGacuCGGc -3'
miRNA:   3'- -CCGugGGCGU---UGcUCAGUGCCgu-GCC- -5'
5562 3' -57.2 NC_001806.1 + 134784 0.69 0.742327
Target:  5'- cGGCACCCagGC-GCGAcGUCgACGcGCGCGa -3'
miRNA:   3'- -CCGUGGG--CGuUGCU-CAG-UGC-CGUGCc -5'
5562 3' -57.2 NC_001806.1 + 133451 0.68 0.822969
Target:  5'- -aCACgCUGCGACGGGUCcugggccugacaACGGCAUGc -3'
miRNA:   3'- ccGUG-GGCGUUGCUCAG------------UGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 132838 0.7 0.703736
Target:  5'- -cCGCCCGCGGCc-GUCgggcccgucuggACGGCGCGGu -3'
miRNA:   3'- ccGUGGGCGUUGcuCAG------------UGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 132755 0.7 0.678123
Target:  5'- cGGCagccggaugccuccuGCCCGCGguGCGGGagGCGGUggcGCGGu -3'
miRNA:   3'- -CCG---------------UGGGCGU--UGCUCagUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 132374 1.13 0.001528
Target:  5'- gGGCACCCGCAACGAGUCACGGCACGGg -3'
miRNA:   3'- -CCGUGGGCGUUGCUCAGUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 130826 0.68 0.788438
Target:  5'- cGCGCCUGCAuUGGGacUCGgCGGC-CGGg -3'
miRNA:   3'- cCGUGGGCGUuGCUC--AGU-GCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 128567 0.74 0.469553
Target:  5'- gGGCGCggUCGUAGCGggaGGUCACGGCGCc- -3'
miRNA:   3'- -CCGUG--GGCGUUGC---UCAGUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 126487 0.66 0.890376
Target:  5'- cGCGCCCG-GGCGcGUCccCGGCcCGGa -3'
miRNA:   3'- cCGUGGGCgUUGCuCAGu-GCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 125691 0.7 0.684061
Target:  5'- cGcCACCUGC-GCGGGUUGCuGCGCGGc -3'
miRNA:   3'- cC-GUGGGCGuUGCUCAGUGcCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 123202 0.68 0.814565
Target:  5'- gGGuCGCCCGCA--GGGUgGCGGaAUGGa -3'
miRNA:   3'- -CC-GUGGGCGUugCUCAgUGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 123122 0.73 0.506767
Target:  5'- cGCACaCCGgGugGCGGGUCGCGGCGgCGa -3'
miRNA:   3'- cCGUG-GGCgU--UGCUCAGUGCCGU-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.