miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 151535 0.7 0.664222
Target:  5'- cGGCGCCCGUGGgcccgggcggcCGGGg-GCGGCGgGGg -3'
miRNA:   3'- -CCGUGGGCGUU-----------GCUCagUGCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 151432 0.69 0.742327
Target:  5'- gGGgGCCCacCGGCGGGggGCGGCgGCGGg -3'
miRNA:   3'- -CCgUGGGc-GUUGCUCagUGCCG-UGCC- -5'
5562 3' -57.2 NC_001806.1 + 151128 0.66 0.902483
Target:  5'- cGGCGCCCccuccccGCccGCGcGUCGCaGGCGCaGGc -3'
miRNA:   3'- -CCGUGGG-------CGu-UGCuCAGUG-CCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 151063 0.79 0.256546
Target:  5'- cGCACCCGCGcGgGGGUCGCGGggguCGCGGg -3'
miRNA:   3'- cCGUGGGCGU-UgCUCAGUGCC----GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 150971 0.75 0.433786
Target:  5'- cGGCccGCUCGCGggcccACGAGcCGCGGCGCGc -3'
miRNA:   3'- -CCG--UGGGCGU-----UGCUCaGUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 150399 0.66 0.89557
Target:  5'- aGCauaACCCGgAACcccagggGAGUgguuacgCGCGGCGCGGg -3'
miRNA:   3'- cCG---UGGGCgUUG-------CUCA-------GUGCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 148169 0.72 0.554937
Target:  5'- cGGCGCCUcuGCGugGGGgggCGCGGgGCGu -3'
miRNA:   3'- -CCGUGGG--CGUugCUCa--GUGCCgUGCc -5'
5562 3' -57.2 NC_001806.1 + 148089 0.68 0.814565
Target:  5'- gGGCGCCgaggggggCGCugucCGAGcCGCGGC-CGGc -3'
miRNA:   3'- -CCGUGG--------GCGuu--GCUCaGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 147784 0.71 0.654262
Target:  5'- gGGgGCCCGgGGCGGGgggCGgagccUGGCAUGGg -3'
miRNA:   3'- -CCgUGGGCgUUGCUCa--GU-----GCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 147717 0.79 0.250619
Target:  5'- cGGCGCUCGCAcgcACGGGgcCACGGCcgcGCGGg -3'
miRNA:   3'- -CCGUGGGCGU---UGCUCa-GUGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 147673 0.68 0.788438
Target:  5'- cGGC-UCCGCccCGGGggcCGgGGCGCGGg -3'
miRNA:   3'- -CCGuGGGCGuuGCUCa--GUgCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 147640 0.67 0.84716
Target:  5'- gGGCACaCgGC-GCGcGUcCGCGGgGCGGg -3'
miRNA:   3'- -CCGUG-GgCGuUGCuCA-GUGCCgUGCC- -5'
5562 3' -57.2 NC_001806.1 + 147228 0.69 0.732795
Target:  5'- cGGCcCCCGCGG-GGGUCGgGGCcgaGGa -3'
miRNA:   3'- -CCGuGGGCGUUgCUCAGUgCCGug-CC- -5'
5562 3' -57.2 NC_001806.1 + 147100 0.67 0.839273
Target:  5'- cGGCcCCCGCGGCccAGaaGCaGCGCGGg -3'
miRNA:   3'- -CCGuGGGCGUUGc-UCagUGcCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 146813 0.68 0.77945
Target:  5'- uGGuUACCCGCGgucuCGGGgagCAgGGUGCGGc -3'
miRNA:   3'- -CC-GUGGGCGUu---GCUCa--GUgCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 144958 0.66 0.86968
Target:  5'- cGGCcCCCGUGGCG-GcC-CGGCcCGGg -3'
miRNA:   3'- -CCGuGGGCGUUGCuCaGuGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 144799 0.67 0.839273
Target:  5'- aGGCcgcguacgGCCCGgGACGAGgggcccccgacCGCGGCGgucCGGg -3'
miRNA:   3'- -CCG--------UGGGCgUUGCUCa----------GUGCCGU---GCC- -5'
5562 3' -57.2 NC_001806.1 + 143784 0.71 0.634299
Target:  5'- -aCACCCGCGACGGGgggACGGaggggACGGa -3'
miRNA:   3'- ccGUGGGCGUUGCUCag-UGCCg----UGCC- -5'
5562 3' -57.2 NC_001806.1 + 143388 0.7 0.693923
Target:  5'- cGGCGacaacgcucCCCgGCGGcCGGGUCGCGGCucuuacgaGCGGc -3'
miRNA:   3'- -CCGU---------GGG-CGUU-GCUCAGUGCCG--------UGCC- -5'
5562 3' -57.2 NC_001806.1 + 143124 0.71 0.654262
Target:  5'- uGGCugCCGgGAgGGGcCGCGGauggGCGGg -3'
miRNA:   3'- -CCGugGGCgUUgCUCaGUGCCg---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.