miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 3' -57.2 NC_001806.1 + 1594 0.66 0.876788
Target:  5'- aGCGCCaCGUAcACGGGccgcaGCGGCGCGc -3'
miRNA:   3'- cCGUGG-GCGU-UGCUCag---UGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 1834 0.68 0.822969
Target:  5'- cGGCACaggCGCAGCGGcggcgcGUCGgGGUACaGGc -3'
miRNA:   3'- -CCGUGg--GCGUUGCU------CAGUgCCGUG-CC- -5'
5562 3' -57.2 NC_001806.1 + 2029 0.68 0.788438
Target:  5'- cGgGCCCGuCGGCGggccAGUCGCaGGCGCGc -3'
miRNA:   3'- cCgUGGGC-GUUGC----UCAGUG-CCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 2539 0.69 0.770337
Target:  5'- cGCACCgCGCGGCGAucgagGcCAgGGCccGCGGg -3'
miRNA:   3'- cCGUGG-GCGUUGCU-----CaGUgCCG--UGCC- -5'
5562 3' -57.2 NC_001806.1 + 2731 0.69 0.751766
Target:  5'- cGGgGCCCuCGGCGGGccggcgcgaCACGGcCACGGg -3'
miRNA:   3'- -CCgUGGGcGUUGCUCa--------GUGCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 2788 0.68 0.788438
Target:  5'- cGGCgGCCCGgGgcgccGCGGG-CugGGCGgGGg -3'
miRNA:   3'- -CCG-UGGGCgU-----UGCUCaGugCCGUgCC- -5'
5562 3' -57.2 NC_001806.1 + 2828 0.71 0.614329
Target:  5'- gGGC-CCCggggGCGugGAGgggggCGCgGGCGCGGg -3'
miRNA:   3'- -CCGuGGG----CGUugCUCa----GUG-CCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3003 0.7 0.664222
Target:  5'- cGGCGgCCGcCAGCGcGUCGgCGGCGucCGGu -3'
miRNA:   3'- -CCGUgGGC-GUUGCuCAGU-GCCGU--GCC- -5'
5562 3' -57.2 NC_001806.1 + 3099 0.74 0.441697
Target:  5'- cGGCGgCCGCGgagcucggcaggcGCGGGUCccGCGGCagcGCGGg -3'
miRNA:   3'- -CCGUgGGCGU-------------UGCUCAG--UGCCG---UGCC- -5'
5562 3' -57.2 NC_001806.1 + 3150 0.71 0.654262
Target:  5'- gGGC-CCCgGCGACcAGgcUCACGGCGCGc -3'
miRNA:   3'- -CCGuGGG-CGUUGcUC--AGUGCCGUGCc -5'
5562 3' -57.2 NC_001806.1 + 3324 0.66 0.890376
Target:  5'- cGGgGCCCGC---GGGUCccucCGGcCGCGGg -3'
miRNA:   3'- -CCgUGGGCGuugCUCAGu---GCC-GUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3449 0.72 0.60436
Target:  5'- aGGCACUcgacggccaCGCGGCcGGcCugGGCGCGGc -3'
miRNA:   3'- -CCGUGG---------GCGUUGcUCaGugCCGUGCC- -5'
5562 3' -57.2 NC_001806.1 + 3483 0.66 0.896847
Target:  5'- nGCGCCCG--GCGucGUCGuCGGCGuCGGc -3'
miRNA:   3'- cCGUGGGCguUGCu-CAGU-GCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 3558 0.66 0.896847
Target:  5'- cGGCggacagccGCCCcaggGCGGCGAGgaucccCGCGGCGCc- -3'
miRNA:   3'- -CCG--------UGGG----CGUUGCUCa-----GUGCCGUGcc -5'
5562 3' -57.2 NC_001806.1 + 4171 0.71 0.614329
Target:  5'- aGCACCCGCcccgggGGCGGGggCcCGGCGcCGGg -3'
miRNA:   3'- cCGUGGGCG------UUGCUCa-GuGCCGU-GCC- -5'
5562 3' -57.2 NC_001806.1 + 4298 0.69 0.770337
Target:  5'- cGGCcgugaagcgGCCCGUGGCG--UCGCGGC-CGGc -3'
miRNA:   3'- -CCG---------UGGGCGUUGCucAGUGCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 4710 0.72 0.564744
Target:  5'- cGCGCCgCGUAGCGGGgccucccguUCGCGGCccCGGg -3'
miRNA:   3'- cCGUGG-GCGUUGCUC---------AGUGCCGu-GCC- -5'
5562 3' -57.2 NC_001806.1 + 4903 0.68 0.822969
Target:  5'- aGCugUCGCGGCGAG--ACGGCGucccCGGc -3'
miRNA:   3'- cCGugGGCGUUGCUCagUGCCGU----GCC- -5'
5562 3' -57.2 NC_001806.1 + 5059 0.7 0.684061
Target:  5'- gGGCccCCCGCucgucGCG-GUCugGGCuCGGg -3'
miRNA:   3'- -CCGu-GGGCGu----UGCuCAGugCCGuGCC- -5'
5562 3' -57.2 NC_001806.1 + 5345 0.67 0.831207
Target:  5'- cGCGCuucguCCGCGuauCGGcGUCcCGGCGCGGc -3'
miRNA:   3'- cCGUG-----GGCGUu--GCU-CAGuGCCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.