Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5562 | 5' | -46.1 | NC_001806.1 | + | 133058 | 0.66 | 0.999986 |
Target: 5'- gCCCUGCGc-UGCGGCaGCUccuggGUGGGg -3' miRNA: 3'- -GGGGCGCuaAUGCUGaUGAaa---CAUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 97262 | 0.66 | 0.99998 |
Target: 5'- uCCCCGUu-UUACGGCUACcgg--GAGg -3' miRNA: 3'- -GGGGCGcuAAUGCUGAUGaaacaUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 67577 | 0.67 | 0.99995 |
Target: 5'- gUCCCGCGGUaucGCGugUugUggGggGGa -3' miRNA: 3'- -GGGGCGCUAa--UGCugAugAaaCauUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 48699 | 0.67 | 0.999934 |
Target: 5'- aCCUGCGGUUGucgucUGAUUAUUUggugGUGGGg -3' miRNA: 3'- gGGGCGCUAAU-----GCUGAUGAAa---CAUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 147996 | 0.67 | 0.999912 |
Target: 5'- cCCCCGCGGcgccGCGGCUcGCgacUGgcGGg -3' miRNA: 3'- -GGGGCGCUaa--UGCUGA-UGaa-ACauUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 35365 | 0.68 | 0.999806 |
Target: 5'- cCCCCGCcccccUACGAUaGCUUgucugGUAGGa -3' miRNA: 3'- -GGGGCGcua--AUGCUGaUGAAa----CAUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 124309 | 0.68 | 0.999806 |
Target: 5'- uCCCCGCG--UACGACauggACcucgGUAAGu -3' miRNA: 3'- -GGGGCGCuaAUGCUGa---UGaaa-CAUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 81373 | 0.68 | 0.999806 |
Target: 5'- gCCCGCGAacauaGGCUGCgggGUAAa -3' miRNA: 3'- gGGGCGCUaaug-CUGAUGaaaCAUUc -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 7458 | 0.69 | 0.999046 |
Target: 5'- cCCCCGCGAaccacgUACGGCUcGCgggucUGUAu- -3' miRNA: 3'- -GGGGCGCUa-----AUGCUGA-UGaa---ACAUuc -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 51701 | 0.7 | 0.99858 |
Target: 5'- aCCCCGUGG--GCGACUGCg------- -3' miRNA: 3'- -GGGGCGCUaaUGCUGAUGaaacauuc -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 45110 | 0.74 | 0.973653 |
Target: 5'- cCCCCGCGAguaGCGACgGCcgUGUGc- -3' miRNA: 3'- -GGGGCGCUaa-UGCUGaUGaaACAUuc -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 113251 | 0.83 | 0.662414 |
Target: 5'- aCCCCGCGuu--CGACUuCUUUGUGGGg -3' miRNA: 3'- -GGGGCGCuaauGCUGAuGAAACAUUC- -5' |
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5562 | 5' | -46.1 | NC_001806.1 | + | 132409 | 1.12 | 0.021937 |
Target: 5'- gCCCCGCGAUUACGACUACUUUGUAAGc -3' miRNA: 3'- -GGGGCGCUAAUGCUGAUGAAACAUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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