miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 58014 0.68 0.494821
Target:  5'- --cGUGGCUGaCCgcgUCCGaCGCGGaGUCCu -3'
miRNA:   3'- auuCGCCGACaGG---GGGC-GCGCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 65651 0.66 0.59953
Target:  5'- -cGGCGGCc-UCCCCCuggguggcuGCGCuGGGgCCg -3'
miRNA:   3'- auUCGCCGacAGGGGG---------CGCG-CCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 67479 0.66 0.59953
Target:  5'- -cAGCGuGCUGgccgCCCUC-CG-GGGUCCc -3'
miRNA:   3'- auUCGC-CGACa---GGGGGcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 68586 0.66 0.609294
Target:  5'- --cGCGGCgg-CCCUgGgGCcGGUCCg -3'
miRNA:   3'- auuCGCCGacaGGGGgCgCGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 69415 0.73 0.258594
Target:  5'- -uGGCGGCgGgcgUCCCCGCGCGGacgCCc -3'
miRNA:   3'- auUCGCCGaCa--GGGGGCGCGCCca-GG- -5'
5564 3' -62.9 NC_001806.1 + 75343 0.66 0.609294
Target:  5'- aAGGCgacucGGUUGgCCCUggaCGCGCGGGUggCCa -3'
miRNA:   3'- aUUCG-----CCGACaGGGG---GCGCGCCCA--GG- -5'
5564 3' -62.9 NC_001806.1 + 78886 0.69 0.44125
Target:  5'- -uGGCGGCacagCUCCCGCGCcuGUCCg -3'
miRNA:   3'- auUCGCCGaca-GGGGGCGCGccCAGG- -5'
5564 3' -62.9 NC_001806.1 + 78923 0.67 0.551158
Target:  5'- cGAGCGGC---CCCUCGCcCGGGgcccgCCg -3'
miRNA:   3'- aUUCGCCGacaGGGGGCGcGCCCa----GG- -5'
5564 3' -62.9 NC_001806.1 + 79956 0.66 0.619074
Target:  5'- gGGGCGaaaaccGCcGcCCCCCGCuaaccuCGGGUCCc -3'
miRNA:   3'- aUUCGC------CGaCaGGGGGCGc-----GCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 86050 0.7 0.383137
Target:  5'- gGGGCgGGCUcGUCCCCUgggGCGgCGGcGUCUa -3'
miRNA:   3'- aUUCG-CCGA-CAGGGGG---CGC-GCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 86092 0.66 0.615161
Target:  5'- aGGGCGGCcagccgcgcgaccGUCUCCUcuaccuCGCGGGUCUg -3'
miRNA:   3'- aUUCGCCGa------------CAGGGGGc-----GCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 87295 0.68 0.449954
Target:  5'- --uGcCGGCgGUCUCCCGCGCGcccUCCg -3'
miRNA:   3'- auuC-GCCGaCAGGGGGCGCGCcc-AGG- -5'
5564 3' -62.9 NC_001806.1 + 88940 0.66 0.609294
Target:  5'- --uGgGGUUGaaCCCCGCcgggGCGuGGUCCa -3'
miRNA:   3'- auuCgCCGACagGGGGCG----CGC-CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 89252 0.67 0.522697
Target:  5'- aAGGCGGggGUCCCCgGC-UGGcUCCg -3'
miRNA:   3'- aUUCGCCgaCAGGGGgCGcGCCcAGG- -5'
5564 3' -62.9 NC_001806.1 + 89520 0.66 0.59953
Target:  5'- cGGGCGGCgagCUgCUGCGCGGcGcCCc -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGCGCC-CaGG- -5'
5564 3' -62.9 NC_001806.1 + 96378 0.74 0.2098
Target:  5'- -cAG-GGCg--CCCCCGCGCGGGggcgCCg -3'
miRNA:   3'- auUCgCCGacaGGGGGCGCGCCCa---GG- -5'
5564 3' -62.9 NC_001806.1 + 96457 0.67 0.551158
Target:  5'- -cGGCGGCUccgaguUCCCCCGgcaCGCcugGGGUCg -3'
miRNA:   3'- auUCGCCGAc-----AGGGGGC---GCG---CCCAGg -5'
5564 3' -62.9 NC_001806.1 + 99957 0.66 0.59953
Target:  5'- --cGcCGGgaGUCgaCCCCGCGCGGcGcgCCu -3'
miRNA:   3'- auuC-GCCgaCAG--GGGGCGCGCC-Ca-GG- -5'
5564 3' -62.9 NC_001806.1 + 100108 0.66 0.589787
Target:  5'- -cGGcCGGCUGaCCgCCCGCcugGC-GGUCCg -3'
miRNA:   3'- auUC-GCCGACaGG-GGGCG---CGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 102987 0.68 0.467641
Target:  5'- --cGcCGGCUcaUCCCCGCGCGcGGcaUCCg -3'
miRNA:   3'- auuC-GCCGAcaGGGGGCGCGC-CC--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.