miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 22692 0.78 0.115152
Target:  5'- gGGGCGGCUGuccgccgcgcccgccUCCCCCGCGgGGGg-- -3'
miRNA:   3'- aUUCGCCGAC---------------AGGGGGCGCgCCCagg -5'
5564 3' -62.9 NC_001806.1 + 23541 0.66 0.609294
Target:  5'- cUGGGCGGCUGgcggcggcagCCCCCG---GGGcCCa -3'
miRNA:   3'- -AUUCGCCGACa---------GGGGGCgcgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 24905 0.68 0.485678
Target:  5'- gAGGCgGGCuUGgccacgCCCCCGCGgCGGGa-- -3'
miRNA:   3'- aUUCG-CCG-ACa-----GGGGGCGC-GCCCagg -5'
5564 3' -62.9 NC_001806.1 + 26884 0.69 0.399218
Target:  5'- --cGCGacccccGCga-CCCCCGCGCGGGUgCg -3'
miRNA:   3'- auuCGC------CGacaGGGGGCGCGCCCAgG- -5'
5564 3' -62.9 NC_001806.1 + 27134 0.69 0.440385
Target:  5'- gAGGCGGCcuggGUCUUCCGCGgagcuccCGGGagcUCCg -3'
miRNA:   3'- aUUCGCCGa---CAGGGGGCGC-------GCCC---AGG- -5'
5564 3' -62.9 NC_001806.1 + 30511 0.67 0.513334
Target:  5'- gAGGCGGCgGUgCgUCCgaggaagagGCGCGGGUCg -3'
miRNA:   3'- aUUCGCCGaCA-GgGGG---------CGCGCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 30724 0.66 0.619074
Target:  5'- ---uCGGCcccGaCCCCCGCGgGGG-CCg -3'
miRNA:   3'- auucGCCGa--CaGGGGGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 35311 0.69 0.407419
Target:  5'- gAGGCGGCgcaa-CCCGaCGCGGGUUUa -3'
miRNA:   3'- aUUCGCCGacaggGGGC-GCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 37854 0.66 0.616139
Target:  5'- -uGGCGcacgccccguguccGCUGgCCUCCGgGUGGGUCg -3'
miRNA:   3'- auUCGC--------------CGACaGGGGGCgCGCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 38396 0.68 0.467641
Target:  5'- -cGGCGGCUcUCCgCCgGCucggGgGGGUCCu -3'
miRNA:   3'- auUCGCCGAcAGG-GGgCG----CgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 41482 0.68 0.476617
Target:  5'- cAGGCGaGC-GUCCCgCGUuauGCGGGcCCa -3'
miRNA:   3'- aUUCGC-CGaCAGGGgGCG---CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 41691 0.67 0.560752
Target:  5'- gGGGCGGCgugCCgCCCGC-CGuGUCCu -3'
miRNA:   3'- aUUCGCCGacaGG-GGGCGcGCcCAGG- -5'
5564 3' -62.9 NC_001806.1 + 42762 0.67 0.560752
Target:  5'- -uAGCGGg-GUCCCgUGCGCcagGGcGUCCu -3'
miRNA:   3'- auUCGCCgaCAGGGgGCGCG---CC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 45282 0.68 0.456985
Target:  5'- -uAGCGGCgGgagacgcgggCCCGCGCGGGgagCCg -3'
miRNA:   3'- auUCGCCGaCagg-------GGGCGCGCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 46059 0.67 0.541613
Target:  5'- ---cCGGagGUCCCCCGgaCGCGGcGUCCc -3'
miRNA:   3'- auucGCCgaCAGGGGGC--GCGCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 46092 0.74 0.225117
Target:  5'- gGGGCGGUuuUGUCCggcccggggCCUGCGCGGGcgCCu -3'
miRNA:   3'- aUUCGCCG--ACAGG---------GGGCGCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 51021 0.75 0.19539
Target:  5'- gUAAGCGGCggGUCCguguugggCC-CGCGGGUCCg -3'
miRNA:   3'- -AUUCGCCGa-CAGGg-------GGcGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 51213 0.66 0.619074
Target:  5'- --cGCGGCauaaCUCCGaccgGCGGGUCCc -3'
miRNA:   3'- auuCGCCGacagGGGGCg---CGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 55728 0.66 0.570393
Target:  5'- -uGGCGGCUGacccgggggaCCCCGaUGUGGGggCCu -3'
miRNA:   3'- auUCGCCGACag--------GGGGC-GCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 57384 0.67 0.560752
Target:  5'- -cGGUGGCUGUCguugcggagcaUCCCGCGCcuuGG-CCg -3'
miRNA:   3'- auUCGCCGACAG-----------GGGGCGCGc--CCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.