Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 20823 | 0.69 | 0.419075 |
Target: 5'- --cGCGGCUG-CCgacacggauccacgaCCCGaCGCGGGaCCg -3' miRNA: 3'- auuCGCCGACaGG---------------GGGC-GCGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 27134 | 0.69 | 0.440385 |
Target: 5'- gAGGCGGCcuggGUCUUCCGCGgagcuccCGGGagcUCCg -3' miRNA: 3'- aUUCGCCGa---CAGGGGGCGC-------GCCC---AGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 78886 | 0.69 | 0.44125 |
Target: 5'- -uGGCGGCacagCUCCCGCGCcuGUCCg -3' miRNA: 3'- auUCGCCGaca-GGGGGCGCGccCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 119592 | 0.68 | 0.449954 |
Target: 5'- -uGGCGGguCUGgagcCCCCCG-GCGGGggCCg -3' miRNA: 3'- auUCGCC--GACa---GGGGGCgCGCCCa-GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 87295 | 0.68 | 0.449954 |
Target: 5'- --uGcCGGCgGUCUCCCGCGCGcccUCCg -3' miRNA: 3'- auuC-GCCGaCAGGGGGCGCGCcc-AGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 3931 | 0.68 | 0.45083 |
Target: 5'- gAAGCaGGCcugguccagcgccacGUCCCCggggaccaCGCGCGGGUUCu -3' miRNA: 3'- aUUCG-CCGa--------------CAGGGG--------GCGCGCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 45282 | 0.68 | 0.456985 |
Target: 5'- -uAGCGGCgGgagacgcgggCCCGCGCGGGgagCCg -3' miRNA: 3'- auUCGCCGaCagg-------GGGCGCGCCCa--GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 4348 | 0.68 | 0.463185 |
Target: 5'- -cGGCGGCgcucgaugcggCCCgcggaggCCGCGgGGGUCCu -3' miRNA: 3'- auUCGCCGaca--------GGG-------GGCGCgCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 38396 | 0.68 | 0.467641 |
Target: 5'- -cGGCGGCUcUCCgCCgGCucggGgGGGUCCu -3' miRNA: 3'- auUCGCCGAcAGG-GGgCG----CgCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 102987 | 0.68 | 0.467641 |
Target: 5'- --cGcCGGCUcaUCCCCGCGCGcGGcaUCCg -3' miRNA: 3'- auuC-GCCGAcaGGGGGCGCGC-CC--AGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 41482 | 0.68 | 0.476617 |
Target: 5'- cAGGCGaGC-GUCCCgCGUuauGCGGGcCCa -3' miRNA: 3'- aUUCGC-CGaCAGGGgGCG---CGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 24905 | 0.68 | 0.485678 |
Target: 5'- gAGGCgGGCuUGgccacgCCCCCGCGgCGGGa-- -3' miRNA: 3'- aUUCG-CCG-ACa-----GGGGGCGC-GCCCagg -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 58014 | 0.68 | 0.494821 |
Target: 5'- --cGUGGCUGaCCgcgUCCGaCGCGGaGUCCu -3' miRNA: 3'- auuCGCCGACaGG---GGGC-GCGCC-CAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 134983 | 0.68 | 0.4985 |
Target: 5'- -cGGCGGCcaucccggugcccgaUG-CCCCCGCcCuGGUCCg -3' miRNA: 3'- auUCGCCG---------------ACaGGGGGCGcGcCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 119891 | 0.68 | 0.50404 |
Target: 5'- --cGCuGCUGUCCUCgGCGCuGG-CCa -3' miRNA: 3'- auuCGcCGACAGGGGgCGCGcCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 146759 | 0.68 | 0.50404 |
Target: 5'- -cAGaGGCUGUUCCacuCCGaCGCGGGggCCg -3' miRNA: 3'- auUCgCCGACAGGG---GGC-GCGCCCa-GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 30511 | 0.67 | 0.513334 |
Target: 5'- gAGGCGGCgGUgCgUCCgaggaagagGCGCGGGUCg -3' miRNA: 3'- aUUCGCCGaCA-GgGGG---------CGCGCCCAGg -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 12891 | 0.67 | 0.522697 |
Target: 5'- --uGCGGCgccaccGUCCCCa-CG-GGGUCCu -3' miRNA: 3'- auuCGCCGa-----CAGGGGgcGCgCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 89252 | 0.67 | 0.522697 |
Target: 5'- aAGGCGGggGUCCCCgGC-UGGcUCCg -3' miRNA: 3'- aUUCGCCgaCAGGGGgCGcGCCcAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 5374 | 0.67 | 0.535913 |
Target: 5'- --cGCGGCgagcgucugacggucUGUCUcuggcgguCCCGCGuCGGGUCg -3' miRNA: 3'- auuCGCCG---------------ACAGG--------GGGCGC-GCCCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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