Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 20823 | 0.69 | 0.419075 |
Target: 5'- --cGCGGCUG-CCgacacggauccacgaCCCGaCGCGGGaCCg -3' miRNA: 3'- auuCGCCGACaGG---------------GGGC-GCGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 148166 | 0.69 | 0.414889 |
Target: 5'- -cGGCGGCg--CCUCUGCGUGGGggggcgcggggcgUCCg -3' miRNA: 3'- auUCGCCGacaGGGGGCGCGCCC-------------AGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 21870 | 0.72 | 0.263953 |
Target: 5'- -cGGCGGCgagGaCCCCCGCggccuccGCGGG-CCg -3' miRNA: 3'- auUCGCCGa--CaGGGGGCG-------CGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 69415 | 0.73 | 0.258594 |
Target: 5'- -uGGCGGCgGgcgUCCCCGCGCGGacgCCc -3' miRNA: 3'- auUCGCCGaCa--GGGGGCGCGCCca-GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 4322 | 0.73 | 0.252744 |
Target: 5'- --cGCGGCcGgccaCCgCCGCGCGGGcCCg -3' miRNA: 3'- auuCGCCGaCa---GGgGGCGCGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 46092 | 0.74 | 0.225117 |
Target: 5'- gGGGCGGUuuUGUCCggcccggggCCUGCGCGGGcgCCu -3' miRNA: 3'- aUUCGCCG--ACAGG---------GGGCGCGCCCa-GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 96378 | 0.74 | 0.2098 |
Target: 5'- -cAG-GGCg--CCCCCGCGCGGGggcgCCg -3' miRNA: 3'- auUCgCCGacaGGGGGCGCGCCCa---GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 51021 | 0.75 | 0.19539 |
Target: 5'- gUAAGCGGCggGUCCguguugggCC-CGCGGGUCCg -3' miRNA: 3'- -AUUCGCCGa-CAGGg-------GGcGCGCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 147213 | 0.76 | 0.148283 |
Target: 5'- -cGGCGGCggaagaggcggCCCCCGCGgGGGUCg -3' miRNA: 3'- auUCGCCGaca--------GGGGGCGCgCCCAGg -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 22692 | 0.78 | 0.115152 |
Target: 5'- gGGGCGGCUGuccgccgcgcccgccUCCCCCGCGgGGGg-- -3' miRNA: 3'- aUUCGCCGAC---------------AGGGGGCGCgCCCagg -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 22275 | 0.72 | 0.270624 |
Target: 5'- gGGGUGGCUccagaaCCCGCGCGuGGUCCc -3' miRNA: 3'- aUUCGCCGAcagg--GGGCGCGC-CCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 142150 | 0.72 | 0.276807 |
Target: 5'- -uGGCGGC-GUCCCgUCGCGgggugGGGUCCg -3' miRNA: 3'- auUCGCCGaCAGGG-GGCGCg----CCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 35311 | 0.69 | 0.407419 |
Target: 5'- gAGGCGGCgcaa-CCCGaCGCGGGUUUa -3' miRNA: 3'- aUUCGCCGacaggGGGC-GCGCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 21290 | 0.69 | 0.407419 |
Target: 5'- cGGGaCGGgaGggCCCCCGCGgCGGGcaCCg -3' miRNA: 3'- aUUC-GCCgaCa-GGGGGCGC-GCCCa-GG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 26884 | 0.69 | 0.399218 |
Target: 5'- --cGCGacccccGCga-CCCCCGCGCGGGUgCg -3' miRNA: 3'- auuCGC------CGacaGGGGGCGCGCCCAgG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 3515 | 0.7 | 0.391124 |
Target: 5'- cGGGCGGCgucgggGUcgucgcCCCCCGCGgGGGa-- -3' miRNA: 3'- aUUCGCCGa-----CA------GGGGGCGCgCCCagg -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 21808 | 0.7 | 0.383137 |
Target: 5'- cGGGCGGaCgccgCCCCCGCcCGGG-CCa -3' miRNA: 3'- aUUCGCC-Gaca-GGGGGCGcGCCCaGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 86050 | 0.7 | 0.383137 |
Target: 5'- gGGGCgGGCUcGUCCCCUgggGCGgCGGcGUCUa -3' miRNA: 3'- aUUCG-CCGA-CAGGGGG---CGC-GCC-CAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 113151 | 0.7 | 0.37526 |
Target: 5'- -cAGCGcCUGgCCCaCGgGCGGGUCCg -3' miRNA: 3'- auUCGCcGACaGGGgGCgCGCCCAGG- -5' |
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5564 | 3' | -62.9 | NC_001806.1 | + | 18947 | 0.71 | 0.330339 |
Target: 5'- cAGGCGGUUGgcaCUgCGUGgGGGUCCc -3' miRNA: 3'- aUUCGCCGACag-GGgGCGCgCCCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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