miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 100108 0.66 0.589787
Target:  5'- -cGGcCGGCUGaCCgCCCGCcugGC-GGUCCg -3'
miRNA:   3'- auUC-GCCGACaGG-GGGCG---CGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 19623 0.66 0.588814
Target:  5'- -cAGUGGCUucCCCCCGCcCGacgagcaggaagcGGUCCa -3'
miRNA:   3'- auUCGCCGAcaGGGGGCGcGC-------------CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 55728 0.66 0.570393
Target:  5'- -uGGCGGCUGacccgggggaCCCCGaUGUGGGggCCu -3'
miRNA:   3'- auUCGCCGACag--------GGGGC-GCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 3575 0.66 0.569427
Target:  5'- aGGGCGGCgagGaUCCCCGCggcgccguacccgGCGGGcaCCg -3'
miRNA:   3'- aUUCGCCGa--CaGGGGGCG-------------CGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 5514 0.66 0.569427
Target:  5'- gAGGCcGCcgGcCCCCCGCccccccgGCGGGcCCa -3'
miRNA:   3'- aUUCGcCGa-CaGGGGGCG-------CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 4143 0.66 0.568461
Target:  5'- cGGGCGGCUGUCgCCCaggccgccguacaGCacccgccccggggGCGGGggcCCg -3'
miRNA:   3'- aUUCGCCGACAGgGGG-------------CG-------------CGCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 103802 0.67 0.564604
Target:  5'- cGGGCGGCg--CCgCCGCGgCggcgacgggcucgcuGGGUCCu -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGC-G---------------CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 57384 0.67 0.560752
Target:  5'- -cGGUGGCUGUCguugcggagcaUCCCGCGCcuuGG-CCg -3'
miRNA:   3'- auUCGCCGACAG-----------GGGGCGCGc--CCaGG- -5'
5564 3' -62.9 NC_001806.1 + 146948 0.67 0.560752
Target:  5'- aUGGGCaGGCaGUCCCCCGUGauaGUCUu -3'
miRNA:   3'- -AUUCG-CCGaCAGGGGGCGCgccCAGG- -5'
5564 3' -62.9 NC_001806.1 + 42762 0.67 0.560752
Target:  5'- -uAGCGGg-GUCCCgUGCGCcagGGcGUCCu -3'
miRNA:   3'- auUCGCCgaCAGGGgGCGCG---CC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 41691 0.67 0.560752
Target:  5'- gGGGCGGCgugCCgCCCGC-CGuGUCCu -3'
miRNA:   3'- aUUCGCCGacaGG-GGGCGcGCcCAGG- -5'
5564 3' -62.9 NC_001806.1 + 78923 0.67 0.551158
Target:  5'- cGAGCGGC---CCCUCGCcCGGGgcccgCCg -3'
miRNA:   3'- aUUCGCCGacaGGGGGCGcGCCCa----GG- -5'
5564 3' -62.9 NC_001806.1 + 96457 0.67 0.551158
Target:  5'- -cGGCGGCUccgaguUCCCCCGgcaCGCcugGGGUCg -3'
miRNA:   3'- auUCGCCGAc-----AGGGGGC---GCG---CCCAGg -5'
5564 3' -62.9 NC_001806.1 + 46059 0.67 0.541613
Target:  5'- ---cCGGagGUCCCCCGgaCGCGGcGUCCc -3'
miRNA:   3'- auucGCCgaCAGGGGGC--GCGCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 15724 0.67 0.541613
Target:  5'- cGGGCGaUUGUUCCcggCCGCGCGGGagCg -3'
miRNA:   3'- aUUCGCcGACAGGG---GGCGCGCCCagG- -5'
5564 3' -62.9 NC_001806.1 + 5374 0.67 0.535913
Target:  5'- --cGCGGCgagcgucugacggucUGUCUcuggcgguCCCGCGuCGGGUCg -3'
miRNA:   3'- auuCGCCG---------------ACAGG--------GGGCGC-GCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 12891 0.67 0.522697
Target:  5'- --uGCGGCgccaccGUCCCCa-CG-GGGUCCu -3'
miRNA:   3'- auuCGCCGa-----CAGGGGgcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 89252 0.67 0.522697
Target:  5'- aAGGCGGggGUCCCCgGC-UGGcUCCg -3'
miRNA:   3'- aUUCGCCgaCAGGGGgCGcGCCcAGG- -5'
5564 3' -62.9 NC_001806.1 + 30511 0.67 0.513334
Target:  5'- gAGGCGGCgGUgCgUCCgaggaagagGCGCGGGUCg -3'
miRNA:   3'- aUUCGCCGaCA-GgGGG---------CGCGCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 119891 0.68 0.50404
Target:  5'- --cGCuGCUGUCCUCgGCGCuGG-CCa -3'
miRNA:   3'- auuCGcCGACAGGGGgCGCGcCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.