miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 51213 0.66 0.619074
Target:  5'- --cGCGGCauaaCUCCGaccgGCGGGUCCc -3'
miRNA:   3'- auuCGCCGacagGGGGCg---CGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 30724 0.66 0.619074
Target:  5'- ---uCGGCcccGaCCCCCGCGgGGG-CCg -3'
miRNA:   3'- auucGCCGa--CaGGGGGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 134915 0.66 0.619074
Target:  5'- cAGGCuGCgGUCCCCgGCGauGG-CCu -3'
miRNA:   3'- aUUCGcCGaCAGGGGgCGCgcCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 79956 0.66 0.619074
Target:  5'- gGGGCGaaaaccGCcGcCCCCCGCuaaccuCGGGUCCc -3'
miRNA:   3'- aUUCGC------CGaCaGGGGGCGc-----GCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 37854 0.66 0.616139
Target:  5'- -uGGCGcacgccccguguccGCUGgCCUCCGgGUGGGUCg -3'
miRNA:   3'- auUCGC--------------CGACaGGGGGCgCGCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 86092 0.66 0.615161
Target:  5'- aGGGCGGCcagccgcgcgaccGUCUCCUcuaccuCGCGGGUCUg -3'
miRNA:   3'- aUUCGCCGa------------CAGGGGGc-----GCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 3115 0.66 0.609294
Target:  5'- -cGGCaGGCgcggGUCCCgCggcaGCGCGGGgCCc -3'
miRNA:   3'- auUCG-CCGa---CAGGG-Gg---CGCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 23541 0.66 0.609294
Target:  5'- cUGGGCGGCUGgcggcggcagCCCCCG---GGGcCCa -3'
miRNA:   3'- -AUUCGCCGACa---------GGGGGCgcgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 75343 0.66 0.609294
Target:  5'- aAGGCgacucGGUUGgCCCUggaCGCGCGGGUggCCa -3'
miRNA:   3'- aUUCG-----CCGACaGGGG---GCGCGCCCA--GG- -5'
5564 3' -62.9 NC_001806.1 + 4937 0.66 0.609294
Target:  5'- --cGcCGGCgucgGUgCCCgCCGCGgGGGcCCu -3'
miRNA:   3'- auuC-GCCGa---CA-GGG-GGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 68586 0.66 0.609294
Target:  5'- --cGCGGCgg-CCCUgGgGCcGGUCCg -3'
miRNA:   3'- auuCGCCGacaGGGGgCgCGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 88940 0.66 0.609294
Target:  5'- --uGgGGUUGaaCCCCGCcgggGCGuGGUCCa -3'
miRNA:   3'- auuCgCCGACagGGGGCG----CGC-CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4442 0.66 0.59953
Target:  5'- gGGGCGGC-GUCCgCC-CGgGGGcugCCg -3'
miRNA:   3'- aUUCGCCGaCAGGgGGcGCgCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 99957 0.66 0.59953
Target:  5'- --cGcCGGgaGUCgaCCCCGCGCGGcGcgCCu -3'
miRNA:   3'- auuC-GCCgaCAG--GGGGCGCGCC-Ca-GG- -5'
5564 3' -62.9 NC_001806.1 + 89520 0.66 0.59953
Target:  5'- cGGGCGGCgagCUgCUGCGCGGcGcCCc -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGCGCC-CaGG- -5'
5564 3' -62.9 NC_001806.1 + 65651 0.66 0.59953
Target:  5'- -cGGCGGCc-UCCCCCuggguggcuGCGCuGGGgCCg -3'
miRNA:   3'- auUCGCCGacAGGGGG---------CGCG-CCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 151459 0.66 0.59953
Target:  5'- gGGGCGGCcgcgGgcgcgCUCCUGacCGCGGGuUCCg -3'
miRNA:   3'- aUUCGCCGa---Ca----GGGGGC--GCGCCC-AGG- -5'
5564 3' -62.9 NC_001806.1 + 67479 0.66 0.59953
Target:  5'- -cAGCGuGCUGgccgCCCUC-CG-GGGUCCc -3'
miRNA:   3'- auUCGC-CGACa---GGGGGcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 148777 0.66 0.59953
Target:  5'- gGGGgGGCg--CCCCCGCaacuGCcgGGGUCUu -3'
miRNA:   3'- aUUCgCCGacaGGGGGCG----CG--CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 126571 0.66 0.59953
Target:  5'- aAGGCGGUgcUCCgCCGCGgauCGGG-CCu -3'
miRNA:   3'- aUUCGCCGacAGGgGGCGC---GCCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.