miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 89520 0.66 0.59953
Target:  5'- cGGGCGGCgagCUgCUGCGCGGcGcCCc -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGCGCC-CaGG- -5'
5564 3' -62.9 NC_001806.1 + 89252 0.67 0.522697
Target:  5'- aAGGCGGggGUCCCCgGC-UGGcUCCg -3'
miRNA:   3'- aUUCGCCgaCAGGGGgCGcGCCcAGG- -5'
5564 3' -62.9 NC_001806.1 + 88940 0.66 0.609294
Target:  5'- --uGgGGUUGaaCCCCGCcgggGCGuGGUCCa -3'
miRNA:   3'- auuCgCCGACagGGGGCG----CGC-CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 87295 0.68 0.449954
Target:  5'- --uGcCGGCgGUCUCCCGCGCGcccUCCg -3'
miRNA:   3'- auuC-GCCGaCAGGGGGCGCGCcc-AGG- -5'
5564 3' -62.9 NC_001806.1 + 86092 0.66 0.615161
Target:  5'- aGGGCGGCcagccgcgcgaccGUCUCCUcuaccuCGCGGGUCUg -3'
miRNA:   3'- aUUCGCCGa------------CAGGGGGc-----GCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 86050 0.7 0.383137
Target:  5'- gGGGCgGGCUcGUCCCCUgggGCGgCGGcGUCUa -3'
miRNA:   3'- aUUCG-CCGA-CAGGGGG---CGC-GCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 79956 0.66 0.619074
Target:  5'- gGGGCGaaaaccGCcGcCCCCCGCuaaccuCGGGUCCc -3'
miRNA:   3'- aUUCGC------CGaCaGGGGGCGc-----GCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 78923 0.67 0.551158
Target:  5'- cGAGCGGC---CCCUCGCcCGGGgcccgCCg -3'
miRNA:   3'- aUUCGCCGacaGGGGGCGcGCCCa----GG- -5'
5564 3' -62.9 NC_001806.1 + 78886 0.69 0.44125
Target:  5'- -uGGCGGCacagCUCCCGCGCcuGUCCg -3'
miRNA:   3'- auUCGCCGaca-GGGGGCGCGccCAGG- -5'
5564 3' -62.9 NC_001806.1 + 75343 0.66 0.609294
Target:  5'- aAGGCgacucGGUUGgCCCUggaCGCGCGGGUggCCa -3'
miRNA:   3'- aUUCG-----CCGACaGGGG---GCGCGCCCA--GG- -5'
5564 3' -62.9 NC_001806.1 + 69415 0.73 0.258594
Target:  5'- -uGGCGGCgGgcgUCCCCGCGCGGacgCCc -3'
miRNA:   3'- auUCGCCGaCa--GGGGGCGCGCCca-GG- -5'
5564 3' -62.9 NC_001806.1 + 68586 0.66 0.609294
Target:  5'- --cGCGGCgg-CCCUgGgGCcGGUCCg -3'
miRNA:   3'- auuCGCCGacaGGGGgCgCGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 67479 0.66 0.59953
Target:  5'- -cAGCGuGCUGgccgCCCUC-CG-GGGUCCc -3'
miRNA:   3'- auUCGC-CGACa---GGGGGcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 65651 0.66 0.59953
Target:  5'- -cGGCGGCc-UCCCCCuggguggcuGCGCuGGGgCCg -3'
miRNA:   3'- auUCGCCGacAGGGGG---------CGCG-CCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 58014 0.68 0.494821
Target:  5'- --cGUGGCUGaCCgcgUCCGaCGCGGaGUCCu -3'
miRNA:   3'- auuCGCCGACaGG---GGGC-GCGCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 57384 0.67 0.560752
Target:  5'- -cGGUGGCUGUCguugcggagcaUCCCGCGCcuuGG-CCg -3'
miRNA:   3'- auUCGCCGACAG-----------GGGGCGCGc--CCaGG- -5'
5564 3' -62.9 NC_001806.1 + 55728 0.66 0.570393
Target:  5'- -uGGCGGCUGacccgggggaCCCCGaUGUGGGggCCu -3'
miRNA:   3'- auUCGCCGACag--------GGGGC-GCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 51213 0.66 0.619074
Target:  5'- --cGCGGCauaaCUCCGaccgGCGGGUCCc -3'
miRNA:   3'- auuCGCCGacagGGGGCg---CGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 51021 0.75 0.19539
Target:  5'- gUAAGCGGCggGUCCguguugggCC-CGCGGGUCCg -3'
miRNA:   3'- -AUUCGCCGa-CAGGg-------GGcGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 46092 0.74 0.225117
Target:  5'- gGGGCGGUuuUGUCCggcccggggCCUGCGCGGGcgCCu -3'
miRNA:   3'- aUUCGCCG--ACAGG---------GGGCGCGCCCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.