miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 151459 0.66 0.59953
Target:  5'- gGGGCGGCcgcgGgcgcgCUCCUGacCGCGGGuUCCg -3'
miRNA:   3'- aUUCGCCGa---Ca----GGGGGC--GCGCCC-AGG- -5'
5564 3' -62.9 NC_001806.1 + 148777 0.66 0.59953
Target:  5'- gGGGgGGCg--CCCCCGCaacuGCcgGGGUCUu -3'
miRNA:   3'- aUUCgCCGacaGGGGGCG----CG--CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 148166 0.69 0.414889
Target:  5'- -cGGCGGCg--CCUCUGCGUGGGggggcgcggggcgUCCg -3'
miRNA:   3'- auUCGCCGacaGGGGGCGCGCCC-------------AGG- -5'
5564 3' -62.9 NC_001806.1 + 147213 0.76 0.148283
Target:  5'- -cGGCGGCggaagaggcggCCCCCGCGgGGGUCg -3'
miRNA:   3'- auUCGCCGaca--------GGGGGCGCgCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 146948 0.67 0.560752
Target:  5'- aUGGGCaGGCaGUCCCCCGUGauaGUCUu -3'
miRNA:   3'- -AUUCG-CCGaCAGGGGGCGCgccCAGG- -5'
5564 3' -62.9 NC_001806.1 + 146759 0.68 0.50404
Target:  5'- -cAGaGGCUGUUCCacuCCGaCGCGGGggCCg -3'
miRNA:   3'- auUCgCCGACAGGG---GGC-GCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 142150 0.72 0.276807
Target:  5'- -uGGCGGC-GUCCCgUCGCGgggugGGGUCCg -3'
miRNA:   3'- auUCGCCGaCAGGG-GGCGCg----CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 134983 0.68 0.4985
Target:  5'- -cGGCGGCcaucccggugcccgaUG-CCCCCGCcCuGGUCCg -3'
miRNA:   3'- auUCGCCG---------------ACaGGGGGCGcGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 134915 0.66 0.619074
Target:  5'- cAGGCuGCgGUCCCCgGCGauGG-CCu -3'
miRNA:   3'- aUUCGcCGaCAGGGGgCGCgcCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 131008 1.09 0.000639
Target:  5'- cUAAGCGGCUGUCCCCCGCGCGGGUCCg -3'
miRNA:   3'- -AUUCGCCGACAGGGGGCGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 126571 0.66 0.59953
Target:  5'- aAGGCGGUgcUCCgCCGCGgauCGGG-CCu -3'
miRNA:   3'- aUUCGCCGacAGGgGGCGC---GCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 119891 0.68 0.50404
Target:  5'- --cGCuGCUGUCCUCgGCGCuGG-CCa -3'
miRNA:   3'- auuCGcCGACAGGGGgCGCGcCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 119592 0.68 0.449954
Target:  5'- -uGGCGGguCUGgagcCCCCCG-GCGGGggCCg -3'
miRNA:   3'- auUCGCC--GACa---GGGGGCgCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 113151 0.7 0.37526
Target:  5'- -cAGCGcCUGgCCCaCGgGCGGGUCCg -3'
miRNA:   3'- auUCGCcGACaGGGgGCgCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 103802 0.67 0.564604
Target:  5'- cGGGCGGCg--CCgCCGCGgCggcgacgggcucgcuGGGUCCu -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGC-G---------------CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 102987 0.68 0.467641
Target:  5'- --cGcCGGCUcaUCCCCGCGCGcGGcaUCCg -3'
miRNA:   3'- auuC-GCCGAcaGGGGGCGCGC-CC--AGG- -5'
5564 3' -62.9 NC_001806.1 + 100108 0.66 0.589787
Target:  5'- -cGGcCGGCUGaCCgCCCGCcugGC-GGUCCg -3'
miRNA:   3'- auUC-GCCGACaGG-GGGCG---CGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 99957 0.66 0.59953
Target:  5'- --cGcCGGgaGUCgaCCCCGCGCGGcGcgCCu -3'
miRNA:   3'- auuC-GCCgaCAG--GGGGCGCGCC-Ca-GG- -5'
5564 3' -62.9 NC_001806.1 + 96457 0.67 0.551158
Target:  5'- -cGGCGGCUccgaguUCCCCCGgcaCGCcugGGGUCg -3'
miRNA:   3'- auUCGCCGAc-----AGGGGGC---GCG---CCCAGg -5'
5564 3' -62.9 NC_001806.1 + 96378 0.74 0.2098
Target:  5'- -cAG-GGCg--CCCCCGCGCGGGggcgCCg -3'
miRNA:   3'- auUCgCCGacaGGGGGCGCGCCCa---GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.