miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 120825 0.68 0.580695
Target:  5'- uGCCCU-CCCCCCGCCCccGGCa--- -3'
miRNA:   3'- cCGGGAcGGGGGGUGGGacUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 66750 0.68 0.580695
Target:  5'- cGCCCggGCCCCCCAgCCCcagcucGGCGUc- -3'
miRNA:   3'- cCGGGa-CGGGGGGU-GGGac----UUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 134998 0.67 0.59062
Target:  5'- uGCCCgaUG-CCCCCGCCCUGGuccgGCGc-- -3'
miRNA:   3'- cCGGG--ACgGGGGGUGGGACU----UGCauu -5'
5565 5' -60.8 NC_001806.1 + 96518 0.67 0.59062
Target:  5'- gGGCCCUGCCaCUCCGgcgccgcccgcCCCUG-GCGc-- -3'
miRNA:   3'- -CCGGGACGG-GGGGU-----------GGGACuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 60971 0.67 0.59062
Target:  5'- cGGaCCCagGcCCCCCCACCCgcguucuacaaGGACGUc- -3'
miRNA:   3'- -CC-GGGa-C-GGGGGGUGGGa----------CUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 50484 0.67 0.59062
Target:  5'- cGCCCUGCCCCUgggaaGCCCcgcGGuCGUGGg -3'
miRNA:   3'- cCGGGACGGGGGg----UGGGa--CUuGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 23306 0.67 0.59062
Target:  5'- cGGCCCgGCCCggCCGCCCgGAGgCGg-- -3'
miRNA:   3'- -CCGGGaCGGGg-GGUGGGaCUU-GCauu -5'
5565 5' -60.8 NC_001806.1 + 149126 0.67 0.59062
Target:  5'- aGUCCUGCCCCCCugCUggccuCGg-- -3'
miRNA:   3'- cCGGGACGGGGGGugGGacuu-GCauu -5'
5565 5' -60.8 NC_001806.1 + 87416 0.67 0.594599
Target:  5'- gGGCgCCUcCCCCCCGgcgccccuaaaucgcCCCUGggUGUc- -3'
miRNA:   3'- -CCG-GGAcGGGGGGU---------------GGGACuuGCAuu -5'
5565 5' -60.8 NC_001806.1 + 24513 0.67 0.600574
Target:  5'- gGGCCgUGCUgCCgGCgCUGGACGg-- -3'
miRNA:   3'- -CCGGgACGGgGGgUGgGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 144303 0.67 0.600574
Target:  5'- cGGCCCgcgacaccccCCCCCCGCCCgUGuGgGUAu -3'
miRNA:   3'- -CCGGGac--------GGGGGGUGGG-ACuUgCAUu -5'
5565 5' -60.8 NC_001806.1 + 144594 0.67 0.620543
Target:  5'- cGGCUCUccggGCCCCCCugCagccgGGGCGg-- -3'
miRNA:   3'- -CCGGGA----CGGGGGGugGga---CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 20296 0.67 0.624542
Target:  5'- cGGCCCcGCCCCCUuggggcggucccGCCCgccggccaauggggGGGCGg-- -3'
miRNA:   3'- -CCGGGaCGGGGGG------------UGGGa-------------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 142062 0.67 0.630543
Target:  5'- cGGCCgguucGCCCCCCgaACCC-GGACGg-- -3'
miRNA:   3'- -CCGGga---CGGGGGG--UGGGaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 124911 0.67 0.630543
Target:  5'- uGGCCCUGCUCgCCUAUCgCU--GCGUGc -3'
miRNA:   3'- -CCGGGACGGG-GGGUGG-GAcuUGCAUu -5'
5565 5' -60.8 NC_001806.1 + 53341 0.67 0.640544
Target:  5'- cGGCCCga-CCaacgucgCCGCCCUGAGCGc-- -3'
miRNA:   3'- -CCGGGacgGGg------GGUGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 114537 0.67 0.640544
Target:  5'- cGCCCaauuuCCCCCCgGCCCUGcGCGa-- -3'
miRNA:   3'- cCGGGac---GGGGGG-UGGGACuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 112041 0.66 0.65054
Target:  5'- cGCCCUGCUCacgggggagGCCCUGGACGg-- -3'
miRNA:   3'- cCGGGACGGGggg------UGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 113713 0.66 0.654534
Target:  5'- aGGCCCUGgCCCagcugguugaugacuUUACCCUGAcCGg-- -3'
miRNA:   3'- -CCGGGACgGGG---------------GGUGGGACUuGCauu -5'
5565 5' -60.8 NC_001806.1 + 139246 0.66 0.657528
Target:  5'- uGGCCgaguuacuggaagagGCCCCCCugCCUu-ACGUGGu -3'
miRNA:   3'- -CCGGga-------------CGGGGGGugGGAcuUGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.