miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 127283 0.7 0.447885
Target:  5'- aGGCgCCUGCCCCgCCACCCa-------- -3'
miRNA:   3'- -CCG-GGACGGGG-GGUGGGacuugcauu -5'
5565 5' -60.8 NC_001806.1 + 26621 0.69 0.475065
Target:  5'- uGGCCggacaGCCCCCCGCCC-GAGCc--- -3'
miRNA:   3'- -CCGGga---CGGGGGGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 73469 0.69 0.475065
Target:  5'- cGGCCCggccGCCgCCCUgcuggaguuuACCCUGAACa--- -3'
miRNA:   3'- -CCGGGa---CGG-GGGG----------UGGGACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 143431 0.69 0.484307
Target:  5'- cGGCCCgGCCCgcgcuCCCACCCcccgGGcCGUGu -3'
miRNA:   3'- -CCGGGaCGGG-----GGGUGGGa---CUuGCAUu -5'
5565 5' -60.8 NC_001806.1 + 149780 0.69 0.484307
Target:  5'- cGCCCgGCCCCUCACCUcgcgcuggGGGCGg-- -3'
miRNA:   3'- cCGGGaCGGGGGGUGGGa-------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 151251 0.69 0.484307
Target:  5'- aGCCCcGCCCCCCggGCCCacgccGGGCGg-- -3'
miRNA:   3'- cCGGGaCGGGGGG--UGGGa----CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 29760 0.69 0.493635
Target:  5'- cGCCC-GCCCCCCGCC--GGACGc-- -3'
miRNA:   3'- cCGGGaCGGGGGGUGGgaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 27064 0.69 0.512529
Target:  5'- gGGCCCgagGCCCgugCCCggGCCCUGGcccGCGg-- -3'
miRNA:   3'- -CCGGGa--CGGG---GGG--UGGGACU---UGCauu -5'
5565 5' -60.8 NC_001806.1 + 125397 0.69 0.512529
Target:  5'- -cCCCUGCCCCCCccACCCcaGACGa-- -3'
miRNA:   3'- ccGGGACGGGGGG--UGGGacUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 133746 0.69 0.522088
Target:  5'- cGGCCCcuugUGCUCCCC-CCCgUGGACu--- -3'
miRNA:   3'- -CCGGG----ACGGGGGGuGGG-ACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 72146 0.69 0.522088
Target:  5'- gGGCCCUGCgCCCCCugUCguacACGc-- -3'
miRNA:   3'- -CCGGGACG-GGGGGugGGacu-UGCauu -5'
5565 5' -60.8 NC_001806.1 + 42389 0.69 0.522088
Target:  5'- uGGCCCccgcGCCCCCCagACgCUGGGCcUGAa -3'
miRNA:   3'- -CCGGGa---CGGGGGG--UGgGACUUGcAUU- -5'
5565 5' -60.8 NC_001806.1 + 22900 0.69 0.522088
Target:  5'- cGGCCCgccaGCCCCCCGCggCCgGAGgGa-- -3'
miRNA:   3'- -CCGGGa---CGGGGGGUG--GGaCUUgCauu -5'
5565 5' -60.8 NC_001806.1 + 51001 0.69 0.522088
Target:  5'- aGCCCUucCCCCCCGCCCc---CGUAAg -3'
miRNA:   3'- cCGGGAc-GGGGGGUGGGacuuGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 24804 0.68 0.531715
Target:  5'- gGGCCCUGCCgCCggcgCCGCCCgGGAUu--- -3'
miRNA:   3'- -CCGGGACGG-GG----GGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 51366 0.68 0.541406
Target:  5'- cGGCgggugUCUGCUCCCCACCCcGGAgGg-- -3'
miRNA:   3'- -CCG-----GGACGGGGGGUGGGaCUUgCauu -5'
5565 5' -60.8 NC_001806.1 + 90896 0.68 0.541406
Target:  5'- uGGCCCgcgcgGCCgCCCACCU--GGCGUu- -3'
miRNA:   3'- -CCGGGa----CGGgGGGUGGGacUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 115219 0.68 0.541406
Target:  5'- cGGCCCUGCaaCCCCCggggacgcgccGCCggGGGCGUu- -3'
miRNA:   3'- -CCGGGACG--GGGGG-----------UGGgaCUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 11119 0.68 0.551154
Target:  5'- gGGCCCU-CUCCCCGgcuUCCUGAACu--- -3'
miRNA:   3'- -CCGGGAcGGGGGGU---GGGACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 49605 0.68 0.560956
Target:  5'- gGGCCC-GUUCCCCGCCCaaggUGGAgGUu- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGG----ACUUgCAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.