miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 30265 0.73 0.285089
Target:  5'- gGGCCCgGCCCCCgCGCCCcggcccccgGGGCGg-- -3'
miRNA:   3'- -CCGGGaCGGGGG-GUGGGa--------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 42389 0.69 0.522088
Target:  5'- uGGCCCccgcGCCCCCCagACgCUGGGCcUGAa -3'
miRNA:   3'- -CCGGGa---CGGGGGG--UGgGACUUGcAUU- -5'
5565 5' -60.8 NC_001806.1 + 43407 0.66 0.700147
Target:  5'- aGGCCCgcgccuugGCCCgcacguaCCACgCCUGcAugGUGAa -3'
miRNA:   3'- -CCGGGa-------CGGGg------GGUG-GGAC-UugCAUU- -5'
5565 5' -60.8 NC_001806.1 + 49605 0.68 0.560956
Target:  5'- gGGCCC-GUUCCCCGCCCaaggUGGAgGUu- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGG----ACUUgCAuu -5'
5565 5' -60.8 NC_001806.1 + 50484 0.67 0.59062
Target:  5'- cGCCCUGCCCCUgggaaGCCCcgcGGuCGUGGg -3'
miRNA:   3'- cCGGGACGGGGGg----UGGGa--CUuGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 51001 0.69 0.522088
Target:  5'- aGCCCUucCCCCCCGCCCc---CGUAAg -3'
miRNA:   3'- cCGGGAc-GGGGGGUGGGacuuGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 51366 0.68 0.541406
Target:  5'- cGGCgggugUCUGCUCCCCACCCcGGAgGg-- -3'
miRNA:   3'- -CCG-----GGACGGGGGGUGGGaCUUgCauu -5'
5565 5' -60.8 NC_001806.1 + 53341 0.67 0.640544
Target:  5'- cGGCCCga-CCaacgucgCCGCCCUGAGCGc-- -3'
miRNA:   3'- -CCGGGacgGGg------GGUGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 55032 0.66 0.660521
Target:  5'- cGGCCgUGCaCgUCGCCUUGAACGg-- -3'
miRNA:   3'- -CCGGgACGgGgGGUGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 55260 0.7 0.439018
Target:  5'- cGCCCgggccgGCCCCCUccGCCCaGAgcACGUGGg -3'
miRNA:   3'- cCGGGa-----CGGGGGG--UGGGaCU--UGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 58703 0.66 0.68041
Target:  5'- uGGCCCgugaucGCCaaCUCCACCC--GACGUAGg -3'
miRNA:   3'- -CCGGGa-----CGG--GGGGUGGGacUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 60971 0.67 0.59062
Target:  5'- cGGaCCCagGcCCCCCCACCCgcguucuacaaGGACGUc- -3'
miRNA:   3'- -CC-GGGa-C-GGGGGGUGGGa----------CUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 65645 0.66 0.67048
Target:  5'- gGGCCCcgGCggCCUCC-CCCUGggUGg-- -3'
miRNA:   3'- -CCGGGa-CG--GGGGGuGGGACuuGCauu -5'
5565 5' -60.8 NC_001806.1 + 66750 0.68 0.580695
Target:  5'- cGCCCggGCCCCCCAgCCCcagcucGGCGUc- -3'
miRNA:   3'- cCGGGa-CGGGGGGU-GGGac----UUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 68072 0.66 0.67048
Target:  5'- uGGUCuacgCUGUCCCCCACCCacgcgagccGGGCGUc- -3'
miRNA:   3'- -CCGG----GACGGGGGGUGGGa--------CUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 69961 0.66 0.690302
Target:  5'- gGGCUUcGUCCCCUacguucugGCCCUGGugGUc- -3'
miRNA:   3'- -CCGGGaCGGGGGG--------UGGGACUugCAuu -5'
5565 5' -60.8 NC_001806.1 + 70517 0.71 0.379906
Target:  5'- gGGCCCUGgCCCCCCgagGCCaugggGGACGc-- -3'
miRNA:   3'- -CCGGGAC-GGGGGG---UGGga---CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 72146 0.69 0.522088
Target:  5'- gGGCCCUGCgCCCCCugUCguacACGc-- -3'
miRNA:   3'- -CCGGGACG-GGGGGugGGacu-UGCauu -5'
5565 5' -60.8 NC_001806.1 + 73469 0.69 0.475065
Target:  5'- cGGCCCggccGCCgCCCUgcuggaguuuACCCUGAACa--- -3'
miRNA:   3'- -CCGGGa---CGG-GGGG----------UGGGACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 74820 0.76 0.190541
Target:  5'- gGGUCCUGCgCCCCCuCCCUGAcuuUGUGGg -3'
miRNA:   3'- -CCGGGACG-GGGGGuGGGACUu--GCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.