miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 114537 0.67 0.640544
Target:  5'- cGCCCaauuuCCCCCCgGCCCUGcGCGa-- -3'
miRNA:   3'- cCGGGac---GGGGGG-UGGGACuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 113713 0.66 0.654534
Target:  5'- aGGCCCUGgCCCagcugguugaugacuUUACCCUGAcCGg-- -3'
miRNA:   3'- -CCGGGACgGGG---------------GGUGGGACUuGCauu -5'
5565 5' -60.8 NC_001806.1 + 112041 0.66 0.65054
Target:  5'- cGCCCUGCUCacgggggagGCCCUGGACGg-- -3'
miRNA:   3'- cCGGGACGGGggg------UGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 110098 0.74 0.278625
Target:  5'- cGGCCCagagGCCCCCUACggUGGAUGUGGg -3'
miRNA:   3'- -CCGGGa---CGGGGGGUGggACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 108176 0.66 0.660521
Target:  5'- cGCCCggguuucugGCCgCCUCugCgCUGGGCGUGGu -3'
miRNA:   3'- cCGGGa--------CGG-GGGGugG-GACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 105148 0.66 0.690302
Target:  5'- cGGCCgUGCCgCCCCAgggugccgagcCCCaGAGCa--- -3'
miRNA:   3'- -CCGGgACGG-GGGGU-----------GGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 100580 0.66 0.690302
Target:  5'- aGGCUCcGCCCCCCACauuUUGAAUu--- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGg--GACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 99792 0.66 0.700147
Target:  5'- uGGUUCcgGUCCCCCACCUgaGGGCGa-- -3'
miRNA:   3'- -CCGGGa-CGGGGGGUGGGa-CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 96518 0.67 0.59062
Target:  5'- gGGCCCUGCCaCUCCGgcgccgcccgcCCCUG-GCGc-- -3'
miRNA:   3'- -CCGGGACGG-GGGGU-----------GGGACuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 95785 0.71 0.396247
Target:  5'- cGGCCCUGCUCCCCagcaucACCCUcgcuucuucGAGCu--- -3'
miRNA:   3'- -CCGGGACGGGGGG------UGGGA---------CUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 92106 0.66 0.659523
Target:  5'- gGGCCgUGCCCCCUGCUucagcuuCUcGGGCGg-- -3'
miRNA:   3'- -CCGGgACGGGGGGUGG-------GA-CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 90896 0.68 0.541406
Target:  5'- uGGCCCgcgcgGCCgCCCACCU--GGCGUu- -3'
miRNA:   3'- -CCGGGa----CGGgGGGUGGGacUUGCAuu -5'
5565 5' -60.8 NC_001806.1 + 87416 0.67 0.594599
Target:  5'- gGGCgCCUcCCCCCCGgcgccccuaaaucgcCCCUGggUGUc- -3'
miRNA:   3'- -CCG-GGAcGGGGGGU---------------GGGACuuGCAuu -5'
5565 5' -60.8 NC_001806.1 + 82429 0.7 0.42073
Target:  5'- gGGCCC-GCCuccccguCCCCGCCCcGcAACGUAGa -3'
miRNA:   3'- -CCGGGaCGG-------GGGGUGGGaC-UUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 80221 0.71 0.396247
Target:  5'- aGGCCC-GCCCCCCACauaCUuGACGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGg--GAcUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 74820 0.76 0.190541
Target:  5'- gGGUCCUGCgCCCCCuCCCUGAcuuUGUGGg -3'
miRNA:   3'- -CCGGGACG-GGGGGuGGGACUu--GCAUU- -5'
5565 5' -60.8 NC_001806.1 + 73469 0.69 0.475065
Target:  5'- cGGCCCggccGCCgCCCUgcuggaguuuACCCUGAACa--- -3'
miRNA:   3'- -CCGGGa---CGG-GGGG----------UGGGACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 72146 0.69 0.522088
Target:  5'- gGGCCCUGCgCCCCCugUCguacACGc-- -3'
miRNA:   3'- -CCGGGACG-GGGGGugGGacu-UGCauu -5'
5565 5' -60.8 NC_001806.1 + 70517 0.71 0.379906
Target:  5'- gGGCCCUGgCCCCCCgagGCCaugggGGACGc-- -3'
miRNA:   3'- -CCGGGAC-GGGGGG---UGGga---CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 69961 0.66 0.690302
Target:  5'- gGGCUUcGUCCCCUacguucugGCCCUGGugGUc- -3'
miRNA:   3'- -CCGGGaCGGGGGG--------UGGGACUugCAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.