miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 152015 0.71 0.371906
Target:  5'- cGGCCCcGCCCCCCacGCCCgccGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGG--UGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 151251 0.69 0.484307
Target:  5'- aGCCCcGCCCCCCggGCCCacgccGGGCGg-- -3'
miRNA:   3'- cCGGGaCGGGGGG--UGGGa----CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 150598 0.66 0.677435
Target:  5'- cGGCCCgGCCCauugggcgguaacuCCCGCCCaaUGGGCc--- -3'
miRNA:   3'- -CCGGGaCGGG--------------GGGUGGG--ACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 149780 0.69 0.484307
Target:  5'- cGCCCgGCCCCUCACCUcgcgcuggGGGCGg-- -3'
miRNA:   3'- cCGGGaCGGGGGGUGGGa-------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 149126 0.67 0.59062
Target:  5'- aGUCCUGCCCCCCugCUggccuCGg-- -3'
miRNA:   3'- cCGGGACGGGGGGugGGacuu-GCauu -5'
5565 5' -60.8 NC_001806.1 + 147320 0.73 0.319186
Target:  5'- uGGCCgC-GCCCCCCcgGCCCUGAGuCGg-- -3'
miRNA:   3'- -CCGG-GaCGGGGGG--UGGGACUU-GCauu -5'
5565 5' -60.8 NC_001806.1 + 144594 0.67 0.620543
Target:  5'- cGGCUCUccggGCCCCCCugCagccgGGGCGg-- -3'
miRNA:   3'- -CCGGGA----CGGGGGGugGga---CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 144303 0.67 0.600574
Target:  5'- cGGCCCgcgacaccccCCCCCCGCCCgUGuGgGUAu -3'
miRNA:   3'- -CCGGGac--------GGGGGGUGGG-ACuUgCAUu -5'
5565 5' -60.8 NC_001806.1 + 143431 0.69 0.484307
Target:  5'- cGGCCCgGCCCgcgcuCCCACCCcccgGGcCGUGu -3'
miRNA:   3'- -CCGGGaCGGG-----GGGUGGGa---CUuGCAUu -5'
5565 5' -60.8 NC_001806.1 + 142062 0.67 0.630543
Target:  5'- cGGCCgguucGCCCCCCgaACCC-GGACGg-- -3'
miRNA:   3'- -CCGGga---CGGGGGG--UGGGaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 139246 0.66 0.657528
Target:  5'- uGGCCgaguuacuggaagagGCCCCCCugCCUu-ACGUGGu -3'
miRNA:   3'- -CCGGga-------------CGGGGGGugGGAcuUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 134998 0.67 0.59062
Target:  5'- uGCCCgaUG-CCCCCGCCCUGGuccgGCGc-- -3'
miRNA:   3'- cCGGG--ACgGGGGGUGGGACU----UGCauu -5'
5565 5' -60.8 NC_001806.1 + 133746 0.69 0.522088
Target:  5'- cGGCCCcuugUGCUCCCC-CCCgUGGACu--- -3'
miRNA:   3'- -CCGGG----ACGGGGGGuGGG-ACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 132076 0.66 0.700147
Target:  5'- gGGCCC-GCCCgCCGCCCcucGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGgGGUGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 130757 1.07 0.001308
Target:  5'- uGGCCCUGCCCCCCACCCUGAACGUAAc -3'
miRNA:   3'- -CCGGGACGGGGGGUGGGACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 127283 0.7 0.447885
Target:  5'- aGGCgCCUGCCCCgCCACCCa-------- -3'
miRNA:   3'- -CCG-GGACGGGG-GGUGGGacuugcauu -5'
5565 5' -60.8 NC_001806.1 + 125397 0.69 0.512529
Target:  5'- -cCCCUGCCCCCCccACCCcaGACGa-- -3'
miRNA:   3'- ccGGGACGGGGGG--UGGGacUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 124911 0.67 0.630543
Target:  5'- uGGCCCUGCUCgCCUAUCgCU--GCGUGc -3'
miRNA:   3'- -CCGGGACGGG-GGGUGG-GAcuUGCAUu -5'
5565 5' -60.8 NC_001806.1 + 120825 0.68 0.580695
Target:  5'- uGCCCU-CCCCCCGCCCccGGCa--- -3'
miRNA:   3'- cCGGGAcGGGGGGUGGGacUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 115219 0.68 0.541406
Target:  5'- cGGCCCUGCaaCCCCCggggacgcgccGCCggGGGCGUu- -3'
miRNA:   3'- -CCGGGACG--GGGGG-----------UGGgaCUUGCAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.