miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 130757 1.07 0.001308
Target:  5'- uGGCCCUGCCCCCCACCCUGAACGUAAc -3'
miRNA:   3'- -CCGGGACGGGGGGUGGGACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 74820 0.76 0.190541
Target:  5'- gGGUCCUGCgCCCCCuCCCUGAcuuUGUGGg -3'
miRNA:   3'- -CCGGGACG-GGGGGuGGGACUu--GCAUU- -5'
5565 5' -60.8 NC_001806.1 + 30165 0.75 0.225629
Target:  5'- aGGCUCcGCCCCCCGCCCcGGGCc--- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 29549 0.75 0.225629
Target:  5'- gGGCCCUgucGCCCaCCCACCCgGAGCc--- -3'
miRNA:   3'- -CCGGGA---CGGG-GGGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 110098 0.74 0.278625
Target:  5'- cGGCCCagagGCCCCCUACggUGGAUGUGGg -3'
miRNA:   3'- -CCGGGa---CGGGGGGUGggACUUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 30265 0.73 0.285089
Target:  5'- gGGCCCgGCCCCCgCGCCCcggcccccgGGGCGg-- -3'
miRNA:   3'- -CCGGGaCGGGGG-GUGGGa--------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 26681 0.73 0.291671
Target:  5'- cGGCCCcgGCCCCcaCCGCCCg--GCGUGGg -3'
miRNA:   3'- -CCGGGa-CGGGG--GGUGGGacuUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 5522 0.73 0.312129
Target:  5'- cGGCCCcccGCCCCCCcggcgggcccACCCcGAACGg-- -3'
miRNA:   3'- -CCGGGa--CGGGGGG----------UGGGaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 23517 0.73 0.312129
Target:  5'- cGGCCCgccgaggGCCCCgaCC-CCCUGGGCGg-- -3'
miRNA:   3'- -CCGGGa------CGGGG--GGuGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 147320 0.73 0.319186
Target:  5'- uGGCCgC-GCCCCCCcgGCCCUGAGuCGg-- -3'
miRNA:   3'- -CCGG-GaCGGGGGG--UGGGACUU-GCauu -5'
5565 5' -60.8 NC_001806.1 + 22057 0.72 0.326363
Target:  5'- uGGCCCggcgccgGgCCCCCGCCCccgGGGCGg-- -3'
miRNA:   3'- -CCGGGa------CgGGGGGUGGGa--CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 20482 0.72 0.341072
Target:  5'- gGGCCCcGCCCCCUGCCCguuccuCGUu- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGGacuu--GCAuu -5'
5565 5' -60.8 NC_001806.1 + 305 0.71 0.371906
Target:  5'- cGGCCCcGCCCCCCacGCCCgccGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGG--UGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 152015 0.71 0.371906
Target:  5'- cGGCCCcGCCCCCCacGCCCgccGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGG--UGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 70517 0.71 0.379906
Target:  5'- gGGCCCUGgCCCCCCgagGCCaugggGGACGc-- -3'
miRNA:   3'- -CCGGGAC-GGGGGG---UGGga---CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 95785 0.71 0.396247
Target:  5'- cGGCCCUGCUCCCCagcaucACCCUcgcuucuucGAGCu--- -3'
miRNA:   3'- -CCGGGACGGGGGG------UGGGA---------CUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 80221 0.71 0.396247
Target:  5'- aGGCCC-GCCCCCCACauaCUuGACGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGg--GAcUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 23730 0.71 0.404585
Target:  5'- gGGCCC-GCCCCcgCCGCCCaGGccGCGUGc -3'
miRNA:   3'- -CCGGGaCGGGG--GGUGGGaCU--UGCAUu -5'
5565 5' -60.8 NC_001806.1 + 82429 0.7 0.42073
Target:  5'- gGGCCC-GCCuccccguCCCCGCCCcGcAACGUAGa -3'
miRNA:   3'- -CCGGGaCGG-------GGGGUGGGaC-UUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 55260 0.7 0.439018
Target:  5'- cGCCCgggccgGCCCCCUccGCCCaGAgcACGUGGg -3'
miRNA:   3'- cCGGGa-----CGGGGGG--UGGGaCU--UGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.