Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 68072 | 0.66 | 0.67048 |
Target: 5'- uGGUCuacgCUGUCCCCCACCCacgcgagccGGGCGUc- -3' miRNA: 3'- -CCGG----GACGGGGGGUGGGa--------CUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 66750 | 0.68 | 0.580695 |
Target: 5'- cGCCCggGCCCCCCAgCCCcagcucGGCGUc- -3' miRNA: 3'- cCGGGa-CGGGGGGU-GGGac----UUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 65645 | 0.66 | 0.67048 |
Target: 5'- gGGCCCcgGCggCCUCC-CCCUGggUGg-- -3' miRNA: 3'- -CCGGGa-CG--GGGGGuGGGACuuGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 60971 | 0.67 | 0.59062 |
Target: 5'- cGGaCCCagGcCCCCCCACCCgcguucuacaaGGACGUc- -3' miRNA: 3'- -CC-GGGa-C-GGGGGGUGGGa----------CUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 58703 | 0.66 | 0.68041 |
Target: 5'- uGGCCCgugaucGCCaaCUCCACCC--GACGUAGg -3' miRNA: 3'- -CCGGGa-----CGG--GGGGUGGGacUUGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 55260 | 0.7 | 0.439018 |
Target: 5'- cGCCCgggccgGCCCCCUccGCCCaGAgcACGUGGg -3' miRNA: 3'- cCGGGa-----CGGGGGG--UGGGaCU--UGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 55032 | 0.66 | 0.660521 |
Target: 5'- cGGCCgUGCaCgUCGCCUUGAACGg-- -3' miRNA: 3'- -CCGGgACGgGgGGUGGGACUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 53341 | 0.67 | 0.640544 |
Target: 5'- cGGCCCga-CCaacgucgCCGCCCUGAGCGc-- -3' miRNA: 3'- -CCGGGacgGGg------GGUGGGACUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 51366 | 0.68 | 0.541406 |
Target: 5'- cGGCgggugUCUGCUCCCCACCCcGGAgGg-- -3' miRNA: 3'- -CCG-----GGACGGGGGGUGGGaCUUgCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 51001 | 0.69 | 0.522088 |
Target: 5'- aGCCCUucCCCCCCGCCCc---CGUAAg -3' miRNA: 3'- cCGGGAc-GGGGGGUGGGacuuGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 50484 | 0.67 | 0.59062 |
Target: 5'- cGCCCUGCCCCUgggaaGCCCcgcGGuCGUGGg -3' miRNA: 3'- cCGGGACGGGGGg----UGGGa--CUuGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 49605 | 0.68 | 0.560956 |
Target: 5'- gGGCCC-GUUCCCCGCCCaaggUGGAgGUu- -3' miRNA: 3'- -CCGGGaCGGGGGGUGGG----ACUUgCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 43407 | 0.66 | 0.700147 |
Target: 5'- aGGCCCgcgccuugGCCCgcacguaCCACgCCUGcAugGUGAa -3' miRNA: 3'- -CCGGGa-------CGGGg------GGUG-GGAC-UugCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 42389 | 0.69 | 0.522088 |
Target: 5'- uGGCCCccgcGCCCCCCagACgCUGGGCcUGAa -3' miRNA: 3'- -CCGGGa---CGGGGGG--UGgGACUUGcAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 30265 | 0.73 | 0.285089 |
Target: 5'- gGGCCCgGCCCCCgCGCCCcggcccccgGGGCGg-- -3' miRNA: 3'- -CCGGGaCGGGGG-GUGGGa--------CUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 30165 | 0.75 | 0.225629 |
Target: 5'- aGGCUCcGCCCCCCGCCCcGGGCc--- -3' miRNA: 3'- -CCGGGaCGGGGGGUGGGaCUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 29760 | 0.69 | 0.493635 |
Target: 5'- cGCCC-GCCCCCCGCC--GGACGc-- -3' miRNA: 3'- cCGGGaCGGGGGGUGGgaCUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 29549 | 0.75 | 0.225629 |
Target: 5'- gGGCCCUgucGCCCaCCCACCCgGAGCc--- -3' miRNA: 3'- -CCGGGA---CGGG-GGGUGGGaCUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 27064 | 0.69 | 0.512529 |
Target: 5'- gGGCCCgagGCCCgugCCCggGCCCUGGcccGCGg-- -3' miRNA: 3'- -CCGGGa--CGGG---GGG--UGGGACU---UGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 26681 | 0.73 | 0.291671 |
Target: 5'- cGGCCCcgGCCCCcaCCGCCCg--GCGUGGg -3' miRNA: 3'- -CCGGGa-CGGGG--GGUGGGacuUGCAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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