miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5566 5' -50.6 NC_001806.1 + 148176 0.66 0.996364
Target:  5'- uCUGCGUGGggGg--GCGCGGgGcGUCc -3'
miRNA:   3'- uGGCGCACCaaUauaUGUGCUgC-CAG- -5'
5566 5' -50.6 NC_001806.1 + 144800 0.66 0.99606
Target:  5'- gGCCGCGUacggcccgggacgagGGgcccccgacCGCGGCGGUCc -3'
miRNA:   3'- -UGGCGCA---------------CCaauauau--GUGCUGCCAG- -5'
5566 5' -50.6 NC_001806.1 + 61511 0.66 0.995997
Target:  5'- gACCGCcUGGcggaacagcccGUACACG-CGGUCg -3'
miRNA:   3'- -UGGCGcACCaaua-------UAUGUGCuGCCAG- -5'
5566 5' -50.6 NC_001806.1 + 116076 0.66 0.995736
Target:  5'- uGCCGCGUGG--AUcgGCGCcaugcuGGCGGa- -3'
miRNA:   3'- -UGGCGCACCaaUAuaUGUG------CUGCCag -5'
5566 5' -50.6 NC_001806.1 + 99731 0.66 0.995736
Target:  5'- cGCUGUGUGGUggggggcgAUACACGGCcuccGGg- -3'
miRNA:   3'- -UGGCGCACCAaua-----UAUGUGCUG----CCag -5'
5566 5' -50.6 NC_001806.1 + 4018 0.66 0.995022
Target:  5'- aGCCGCGUgaucaGGgcGUAcugcUGCGCGGCG-UCg -3'
miRNA:   3'- -UGGCGCA-----CCaaUAU----AUGUGCUGCcAG- -5'
5566 5' -50.6 NC_001806.1 + 61802 0.66 0.994946
Target:  5'- gGCCGgGUGGUUGaugGUACcggccacguacucGCGGCgcgccuGGUCg -3'
miRNA:   3'- -UGGCgCACCAAUa--UAUG-------------UGCUG------CCAG- -5'
5566 5' -50.6 NC_001806.1 + 23958 0.66 0.993304
Target:  5'- gGCCGCcggaGUGGUccgccgaGCGCGGCGGg- -3'
miRNA:   3'- -UGGCG----CACCAauaua--UGUGCUGCCag -5'
5566 5' -50.6 NC_001806.1 + 90999 0.67 0.989872
Target:  5'- cCCGCG-GGgcGg--GCGCGACGG-Cg -3'
miRNA:   3'- uGGCGCaCCaaUauaUGUGCUGCCaG- -5'
5566 5' -50.6 NC_001806.1 + 13256 0.67 0.989872
Target:  5'- aGCCGCa-GGUac-GUGC-CGGCGGUCu -3'
miRNA:   3'- -UGGCGcaCCAauaUAUGuGCUGCCAG- -5'
5566 5' -50.6 NC_001806.1 + 127515 0.67 0.988463
Target:  5'- aACgGCGgacGGUgcUGUACACGG-GGUCc -3'
miRNA:   3'- -UGgCGCa--CCAauAUAUGUGCUgCCAG- -5'
5566 5' -50.6 NC_001806.1 + 3539 0.67 0.986907
Target:  5'- cCCGCG-GGggAggcggGCGCGGCGGa- -3'
miRNA:   3'- uGGCGCaCCaaUaua--UGUGCUGCCag -5'
5566 5' -50.6 NC_001806.1 + 75745 0.68 0.983316
Target:  5'- gACCGCGUGGaaagcgGUGC-CGAguuugacgUGGUCg -3'
miRNA:   3'- -UGGCGCACCaaua--UAUGuGCU--------GCCAG- -5'
5566 5' -50.6 NC_001806.1 + 40581 0.68 0.983316
Target:  5'- cGCCGCG-GGUcgGcGUGCGCGGCGa-- -3'
miRNA:   3'- -UGGCGCaCCAa-UaUAUGUGCUGCcag -5'
5566 5' -50.6 NC_001806.1 + 104501 0.68 0.976597
Target:  5'- uACUGCG-GGUU-UAUAUA-GACGGUCc -3'
miRNA:   3'- -UGGCGCaCCAAuAUAUGUgCUGCCAG- -5'
5566 5' -50.6 NC_001806.1 + 63184 0.68 0.976597
Target:  5'- uGCCGCG-GGUgcacugGgGCGugGGUUg -3'
miRNA:   3'- -UGGCGCaCCAauaua-UgUGCugCCAG- -5'
5566 5' -50.6 NC_001806.1 + 90313 0.68 0.976597
Target:  5'- gGCCGUGgucgugGGUUcuc-GCACGACGGg- -3'
miRNA:   3'- -UGGCGCa-----CCAAuauaUGUGCUGCCag -5'
5566 5' -50.6 NC_001806.1 + 121996 0.72 0.900011
Target:  5'- cCCGCGUcuGGUUGUGUGugUAUGugGGUg -3'
miRNA:   3'- uGGCGCA--CCAAUAUAU--GUGCugCCAg -5'
5566 5' -50.6 NC_001806.1 + 136279 0.72 0.899348
Target:  5'- cGCCccgGCgGUGGUUGUAguagauaUACACG-CGGUCg -3'
miRNA:   3'- -UGG---CG-CACCAAUAU-------AUGUGCuGCCAG- -5'
5566 5' -50.6 NC_001806.1 + 9762 0.72 0.871578
Target:  5'- cGCCGUG-GGUUGgggGCGCGugGGg- -3'
miRNA:   3'- -UGGCGCaCCAAUauaUGUGCugCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.