miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 70474 0.71 0.503672
Target:  5'- -gCGCCGCCUGUaugcgguggucggggACACGCCcGACCg- -3'
miRNA:   3'- caGCGGUGGACG---------------UGUGUGGuCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 72593 0.66 0.76778
Target:  5'- aGUCGCCGCCacCG-AC-CCGGGCCCGu -3'
miRNA:   3'- -CAGCGGUGGacGUgUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 72891 0.68 0.689852
Target:  5'- gGUCGgCACCggGCACGCuacucgGCCGGccuuCCCAa -3'
miRNA:   3'- -CAGCgGUGGa-CGUGUG------UGGUCu---GGGU- -5'
5567 5' -58.5 NC_001806.1 + 75179 0.68 0.659603
Target:  5'- -gCGCCGCCgucGCA-ACGgCAGACCCu -3'
miRNA:   3'- caGCGGUGGa--CGUgUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 76574 0.69 0.608859
Target:  5'- --gGCCGC--GCGCgaGCGCCGGGCCCAg -3'
miRNA:   3'- cagCGGUGgaCGUG--UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 78840 0.77 0.231719
Target:  5'- cGUCGCCuCCUGCACGCcgACCuGaACCCGa -3'
miRNA:   3'- -CAGCGGuGGACGUGUG--UGGuC-UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 79092 0.74 0.359445
Target:  5'- cUCGCCGCCaGCGC-CACCgacgaGGACCCc -3'
miRNA:   3'- cAGCGGUGGaCGUGuGUGG-----UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 79703 0.67 0.739201
Target:  5'- -aCGCUcCCUgGCGCGCGCC--ACCCAg -3'
miRNA:   3'- caGCGGuGGA-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 80350 0.7 0.578557
Target:  5'- cGUCaGCCGCCUGUcCGCGCCccaaccccAGcCCCAg -3'
miRNA:   3'- -CAG-CGGUGGACGuGUGUGG--------UCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 80976 0.69 0.638299
Target:  5'- -aCGCUACgUGCaACGCACCGGucguagcGCCCu -3'
miRNA:   3'- caGCGGUGgACG-UGUGUGGUC-------UGGGu -5'
5567 5' -58.5 NC_001806.1 + 83220 0.68 0.648451
Target:  5'- cGUCGCCGCCgacgugGuCAC-CGCCcccucaaGGGCCCGc -3'
miRNA:   3'- -CAGCGGUGGa-----C-GUGuGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 84073 0.68 0.689852
Target:  5'- aGUCGgggccCCAgCUGCGCGCugCcgcggAGGCCCGu -3'
miRNA:   3'- -CAGC-----GGUgGACGUGUGugG-----UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 85465 0.69 0.639315
Target:  5'- -cCGcCCACCUGCAC-UACCGG-CUCAu -3'
miRNA:   3'- caGC-GGUGGACGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 86171 0.66 0.80418
Target:  5'- -aCGggACCUGCGCGCGgCGGGCCa- -3'
miRNA:   3'- caGCggUGGACGUGUGUgGUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 86477 0.69 0.639315
Target:  5'- -aCGCgCAgUUGUuuuuGCGCACCAGAUCCAc -3'
miRNA:   3'- caGCG-GUgGACG----UGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 90418 0.66 0.795289
Target:  5'- -cCGgCACCUGgaccccaGCAC-CCAGGCCCc -3'
miRNA:   3'- caGCgGUGGACg------UGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 91193 0.67 0.758361
Target:  5'- -aCGCCgucggggcguACCUgGCGCGCGCCgcgGGACUCGu -3'
miRNA:   3'- caGCGG----------UGGA-CGUGUGUGG---UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 91772 0.68 0.668709
Target:  5'- -aCGCCGCCUucucggcccugaaGCGCGCGgaCGGAUCCGa -3'
miRNA:   3'- caGCGGUGGA-------------CGUGUGUg-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 92495 0.7 0.578557
Target:  5'- gGUCGCCAgCCUccagaGCGCcUACCAGaaGCCCGa -3'
miRNA:   3'- -CAGCGGU-GGA-----CGUGuGUGGUC--UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 93002 0.69 0.639315
Target:  5'- uUCGCCAgCUGCAaccuGCugCGG-CCCGu -3'
miRNA:   3'- cAGCGGUgGACGUg---UGugGUCuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.