miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 36829 0.68 0.689852
Target:  5'- -cCGcCCACCcagGcCGUACGCCGGGCCCAc -3'
miRNA:   3'- caGC-GGUGGa--C-GUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 45138 0.66 0.76778
Target:  5'- aGUCGCCAUC-GUAC-C-CCcGACCCAa -3'
miRNA:   3'- -CAGCGGUGGaCGUGuGuGGuCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 47696 0.67 0.739201
Target:  5'- -cCGgCAgCUGCAC-CGCCAGGCgCAc -3'
miRNA:   3'- caGCgGUgGACGUGuGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 48099 0.68 0.679805
Target:  5'- cUC-CCAcCCUGCAUggcaACCAGGCCCGc -3'
miRNA:   3'- cAGcGGU-GGACGUGug--UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 49347 0.67 0.709795
Target:  5'- aUCGCCGagcgucCCgGCAgCGCcCCGGGCCCGa -3'
miRNA:   3'- cAGCGGU------GGaCGU-GUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 51251 0.66 0.76778
Target:  5'- -gCGUCACCaUGCA-GCGCCGGACgCGc -3'
miRNA:   3'- caGCGGUGG-ACGUgUGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 51819 0.66 0.776156
Target:  5'- cGUgGCCgGCCUGCGCgACGCCcuccaucGGAUUCAg -3'
miRNA:   3'- -CAgCGG-UGGACGUG-UGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 56512 0.68 0.699852
Target:  5'- --gGCCACagcgGCAgGC-CCGGGCCCGg -3'
miRNA:   3'- cagCGGUGga--CGUgUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 57001 0.66 0.786253
Target:  5'- -gCGCCGCauagGCgGCGC-CCAGugCCAg -3'
miRNA:   3'- caGCGGUGga--CG-UGUGuGGUCugGGU- -5'
5567 5' -58.5 NC_001806.1 + 58238 0.71 0.490312
Target:  5'- -cCGCCgACCUGCAguCGCCGGagcaccGCCCGc -3'
miRNA:   3'- caGCGG-UGGACGUguGUGGUC------UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 61434 0.74 0.367382
Target:  5'- aUgGCCGCCaGCGC-CGCCGGGCUCAg -3'
miRNA:   3'- cAgCGGUGGaCGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 63470 0.69 0.608859
Target:  5'- cGUgGCCGCaCUGCGCACAaugccaUAGGCCa- -3'
miRNA:   3'- -CAgCGGUG-GACGUGUGUg-----GUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 63888 0.7 0.548592
Target:  5'- aGUCGUuaaaCGCCUGCACGCAUa--GCCCGa -3'
miRNA:   3'- -CAGCG----GUGGACGUGUGUGgucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 65837 0.66 0.795289
Target:  5'- -cCGCUGCCUGacgaauCGCACCgAGAgCCAa -3'
miRNA:   3'- caGCGGUGGACgu----GUGUGG-UCUgGGU- -5'
5567 5' -58.5 NC_001806.1 + 67091 0.67 0.739201
Target:  5'- -cCGCCACCagGaaguuaaACgACACUAGGCCCGc -3'
miRNA:   3'- caGCGGUGGa-Cg------UG-UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 67164 0.67 0.709795
Target:  5'- gGUCGCCuCCaucaGCugGCcCCAGGCCUc -3'
miRNA:   3'- -CAGCGGuGGa---CGugUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 68363 0.7 0.527906
Target:  5'- --gGCCGCUgcuggaacaccugUGCGCGCuccACCGGGCCCAc -3'
miRNA:   3'- cagCGGUGG-------------ACGUGUG---UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 68570 0.69 0.588629
Target:  5'- -cCGCCgGCCUGCGCAcCGCgGcGGCCCu -3'
miRNA:   3'- caGCGG-UGGACGUGU-GUGgU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 68970 0.66 0.776156
Target:  5'- -cCGCC-CCUGUuggcgcaguuucaGCACACCGugcgggagaucGACCCGg -3'
miRNA:   3'- caGCGGuGGACG-------------UGUGUGGU-----------CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 69369 0.68 0.669719
Target:  5'- -aCGCCcucGCaCUGCACGCACUAccuuucGGCCCu -3'
miRNA:   3'- caGCGG---UG-GACGUGUGUGGU------CUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.