miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 21578 0.66 0.795289
Target:  5'- -cUGUCGCC-GCGCcCGCCGG-CCCAg -3'
miRNA:   3'- caGCGGUGGaCGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21899 0.68 0.649466
Target:  5'- --gGCCGCaucgaGCGC-CGCCGGGCCCGc -3'
miRNA:   3'- cagCGGUGga---CGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 22620 0.74 0.350853
Target:  5'- cGUCGCCGCC-GC-CGCACCGGgcgagcgcgcgguGCCCGc -3'
miRNA:   3'- -CAGCGGUGGaCGuGUGUGGUC-------------UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 22742 0.68 0.659603
Target:  5'- -aCGCCGCCcGC-CACGCC-GACgCCGa -3'
miRNA:   3'- caGCGGUGGaCGuGUGUGGuCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 23075 0.7 0.567521
Target:  5'- cGUgGCCGCCgUGCGCGCcgugagccuggucGCCGgGGCCCu -3'
miRNA:   3'- -CAgCGGUGG-ACGUGUG-------------UGGU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 23201 0.72 0.44765
Target:  5'- -gCGCCcCCUGCuggcggcggcggccaGCGCACCGGACgCCGc -3'
miRNA:   3'- caGCGGuGGACG---------------UGUGUGGUCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 23471 0.67 0.739201
Target:  5'- --gGCCGCCgcgGCGCAgGCCc-GCCCGc -3'
miRNA:   3'- cagCGGUGGa--CGUGUgUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23708 0.7 0.558532
Target:  5'- cUCGaUCGCC-GCGCgguGCGCCGGGCCCGc -3'
miRNA:   3'- cAGC-GGUGGaCGUG---UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23818 0.73 0.383616
Target:  5'- uUgGCCcCCUGCGCGCcUCGGGCCCGc -3'
miRNA:   3'- cAgCGGuGGACGUGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23853 0.71 0.519129
Target:  5'- aUgGCgGCCUGgAUGCGCCAGAUCCc -3'
miRNA:   3'- cAgCGgUGGACgUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 24203 0.67 0.728502
Target:  5'- -gUGCgCGCCUGCgACugGCCcgccgacGGGCCCGc -3'
miRNA:   3'- caGCG-GUGGACG-UGugUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24445 0.7 0.538708
Target:  5'- -gCGCUACCgcgugcGCACGCGCUucGGCCCGg -3'
miRNA:   3'- caGCGGUGGa-----CGUGUGUGGu-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24615 0.82 0.114564
Target:  5'- -aCGCCGCCUGCGCGCGCUGGGgCCu -3'
miRNA:   3'- caGCGGUGGACGUGUGUGGUCUgGGu -5'
5567 5' -58.5 NC_001806.1 + 26407 0.72 0.444037
Target:  5'- -cCGCCGCCcccgGC-CGC-CCGGGCCCAc -3'
miRNA:   3'- caGCGGUGGa---CGuGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 26771 0.66 0.76778
Target:  5'- cUCGCCcuccGCCUGCGCGuCACCgcggAGcACCUg -3'
miRNA:   3'- cAGCGG----UGGACGUGU-GUGG----UC-UGGGu -5'
5567 5' -58.5 NC_001806.1 + 26960 0.67 0.758361
Target:  5'- -cCGcCCGCCUG-GCGCGCCgcggcucguGGGCCCGc -3'
miRNA:   3'- caGC-GGUGGACgUGUGUGG---------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 27284 0.66 0.777081
Target:  5'- --gGCCGCCaGCGCG-GCgGGGCCCGg -3'
miRNA:   3'- cagCGGUGGaCGUGUgUGgUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 29257 0.66 0.80418
Target:  5'- -gCGCCccACCUGCGCugcgACACCuu-CCCGu -3'
miRNA:   3'- caGCGG--UGGACGUG----UGUGGucuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 33722 0.66 0.777081
Target:  5'- -cUGCCGCUugugagUGCGCGCGCCGG-CUCu -3'
miRNA:   3'- caGCGGUGG------ACGUGUGUGGUCuGGGu -5'
5567 5' -58.5 NC_001806.1 + 36340 0.74 0.328907
Target:  5'- cUC-CCGCCgaGgACGCGCCGGACCCAg -3'
miRNA:   3'- cAGcGGUGGa-CgUGUGUGGUCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.