miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 58238 0.71 0.490312
Target:  5'- -cCGCCgACCUGCAguCGCCGGagcaccGCCCGc -3'
miRNA:   3'- caGCGG-UGGACGUguGUGGUC------UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 70474 0.71 0.503672
Target:  5'- -gCGCCGCCUGUaugcgguggucggggACACGCCcGACCg- -3'
miRNA:   3'- caGCGGUGGACG---------------UGUGUGGuCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 125142 0.71 0.519129
Target:  5'- uGUC-CCGCCUGUGuCACACCA-ACCCGu -3'
miRNA:   3'- -CAGcGGUGGACGU-GUGUGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23853 0.71 0.519129
Target:  5'- aUgGCgGCCUGgAUGCGCCAGAUCCc -3'
miRNA:   3'- cAgCGgUGGACgUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 68363 0.7 0.527906
Target:  5'- --gGCCGCUgcuggaacaccugUGCGCGCuccACCGGGCCCAc -3'
miRNA:   3'- cagCGGUGG-------------ACGUGUG---UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 1609 0.7 0.528885
Target:  5'- --gGCCGCagcgGCGCGC-CCAGGCCCc -3'
miRNA:   3'- cagCGGUGga--CGUGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 132269 0.7 0.528885
Target:  5'- -gCGCUAUUUGCGCGCgaauACCAGACUCu -3'
miRNA:   3'- caGCGGUGGACGUGUG----UGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 24445 0.7 0.538708
Target:  5'- -gCGCUACCgcgugcGCACGCGCUucGGCCCGg -3'
miRNA:   3'- caGCGGUGGa-----CGUGUGUGGu-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 63888 0.7 0.548592
Target:  5'- aGUCGUuaaaCGCCUGCACGCAUa--GCCCGa -3'
miRNA:   3'- -CAGCG----GUGGACGUGUGUGgucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 139451 0.7 0.558532
Target:  5'- gGUCGCCAUCUGCuuuACGC-CCGGcaACCUg -3'
miRNA:   3'- -CAGCGGUGGACG---UGUGuGGUC--UGGGu -5'
5567 5' -58.5 NC_001806.1 + 23708 0.7 0.558532
Target:  5'- cUCGaUCGCC-GCGCgguGCGCCGGGCCCGc -3'
miRNA:   3'- cAGC-GGUGGaCGUG---UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23075 0.7 0.567521
Target:  5'- cGUgGCCGCCgUGCGCGCcgugagccuggucGCCGgGGCCCu -3'
miRNA:   3'- -CAgCGGUGG-ACGUGUG-------------UGGU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 80350 0.7 0.578557
Target:  5'- cGUCaGCCGCCUGUcCGCGCCccaaccccAGcCCCAg -3'
miRNA:   3'- -CAG-CGGUGGACGuGUGUGG--------UCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 92495 0.7 0.578557
Target:  5'- gGUCGCCAgCCUccagaGCGCcUACCAGaaGCCCGa -3'
miRNA:   3'- -CAGCGGU-GGA-----CGUGuGUGGUC--UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 131191 0.7 0.578557
Target:  5'- aUCGaCCACa-GCGCcUGCCGGACCCAc -3'
miRNA:   3'- cAGC-GGUGgaCGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 134842 0.69 0.588629
Target:  5'- gGUCGCCgACCUG-GCGCACCucgcAGGCCa- -3'
miRNA:   3'- -CAGCGG-UGGACgUGUGUGG----UCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 68570 0.69 0.588629
Target:  5'- -cCGCCgGCCUGCGCAcCGCgGcGGCCCu -3'
miRNA:   3'- caGCGG-UGGACGUGU-GUGgU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 136778 0.69 0.59772
Target:  5'- aUCGCCGCCUGCAgcugccgggugguCGCcucGCUGGACCgGa -3'
miRNA:   3'- cAGCGGUGGACGU-------------GUG---UGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 63470 0.69 0.608859
Target:  5'- cGUgGCCGCaCUGCGCACAaugccaUAGGCCa- -3'
miRNA:   3'- -CAgCGGUG-GACGUGUGUg-----GUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 76574 0.69 0.608859
Target:  5'- --gGCCGC--GCGCgaGCGCCGGGCCCAg -3'
miRNA:   3'- cagCGGUGgaCGUG--UGUGGUCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.