miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 63470 0.69 0.608859
Target:  5'- cGUgGCCGCaCUGCGCACAaugccaUAGGCCa- -3'
miRNA:   3'- -CAgCGGUG-GACGUGUGUg-----GUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 1545 0.69 0.608859
Target:  5'- -cCGCgGCCcGCGC-CACCGGGCCgGg -3'
miRNA:   3'- caGCGgUGGaCGUGuGUGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 101722 0.69 0.619004
Target:  5'- -gUGCCugCUGCGC-CAgCAGGCCa- -3'
miRNA:   3'- caGCGGugGACGUGuGUgGUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 20107 0.69 0.629158
Target:  5'- -gCGCCGUCUGCGggcgucgguCGCGCCGGGCCUu -3'
miRNA:   3'- caGCGGUGGACGU---------GUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 80976 0.69 0.638299
Target:  5'- -aCGCUACgUGCaACGCACCGGucguagcGCCCu -3'
miRNA:   3'- caGCGGUGgACG-UGUGUGGUC-------UGGGu -5'
5567 5' -58.5 NC_001806.1 + 86477 0.69 0.639315
Target:  5'- -aCGCgCAgUUGUuuuuGCGCACCAGAUCCAc -3'
miRNA:   3'- caGCG-GUgGACG----UGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 85465 0.69 0.639315
Target:  5'- -cCGcCCACCUGCAC-UACCGG-CUCAu -3'
miRNA:   3'- caGC-GGUGGACGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 93002 0.69 0.639315
Target:  5'- uUCGCCAgCUGCAaccuGCugCGG-CCCGu -3'
miRNA:   3'- cAGCGGUgGACGUg---UGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 83220 0.68 0.648451
Target:  5'- cGUCGCCGCCgacgugGuCAC-CGCCcccucaaGGGCCCGc -3'
miRNA:   3'- -CAGCGGUGGa-----C-GUGuGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21899 0.68 0.649466
Target:  5'- --gGCCGCaucgaGCGC-CGCCGGGCCCGc -3'
miRNA:   3'- cagCGGUGga---CGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 350 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 152060 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 22742 0.68 0.659603
Target:  5'- -aCGCCGCCcGC-CACGCC-GACgCCGa -3'
miRNA:   3'- caGCGGUGGaCGuGUGUGGuCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 75179 0.68 0.659603
Target:  5'- -gCGCCGCCgucGCA-ACGgCAGACCCu -3'
miRNA:   3'- caGCGGUGGa--CGUgUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 91772 0.68 0.668709
Target:  5'- -aCGCCGCCUucucggcccugaaGCGCGCGgaCGGAUCCGa -3'
miRNA:   3'- caGCGGUGGA-------------CGUGUGUg-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 120069 0.68 0.669719
Target:  5'- gGUCGCCuuuACCgcgcGCAUACAucuggcgugccuCCGGGCCCu -3'
miRNA:   3'- -CAGCGG---UGGa---CGUGUGU------------GGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 135587 0.68 0.669719
Target:  5'- gGUCgGCCGCgcgCUGCugGCGCUccaGGGCCCc -3'
miRNA:   3'- -CAG-CGGUG---GACGugUGUGG---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 69369 0.68 0.669719
Target:  5'- -aCGCCcucGCaCUGCACGCACUAccuuucGGCCCu -3'
miRNA:   3'- caGCGG---UG-GACGUGUGUGGU------CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 21495 0.68 0.679805
Target:  5'- -aCGCCGCCgGCG---ACCGGGCCCc -3'
miRNA:   3'- caGCGGUGGaCGUgugUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 100649 0.68 0.679805
Target:  5'- -cCGCCGCC-GCucgGC-CACCAGGCuCCAg -3'
miRNA:   3'- caGCGGUGGaCG---UGuGUGGUCUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.