miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 24203 0.67 0.728502
Target:  5'- -gUGCgCGCCUGCgACugGCCcgccgacGGGCCCGc -3'
miRNA:   3'- caGCG-GUGGACG-UGugUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 152033 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 323 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21420 0.67 0.719674
Target:  5'- -cCGCgGCCUcGC-CGCcCCGGACCCc -3'
miRNA:   3'- caGCGgUGGA-CGuGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 145289 0.67 0.716718
Target:  5'- -aCGCCACUcgcgggugggcucgUGUuacaGCACACCAG-CCCGu -3'
miRNA:   3'- caGCGGUGG--------------ACG----UGUGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 49347 0.67 0.709795
Target:  5'- aUCGCCGagcgucCCgGCAgCGCcCCGGGCCCGa -3'
miRNA:   3'- cAGCGGU------GGaCGU-GUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 67164 0.67 0.709795
Target:  5'- gGUCGCCuCCaucaGCugGCcCCAGGCCUc -3'
miRNA:   3'- -CAGCGGuGGa---CGugUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 131567 0.68 0.699852
Target:  5'- -cCGUCACCgguuuccGCgACcCACCGGGCCCGg -3'
miRNA:   3'- caGCGGUGGa------CG-UGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 56512 0.68 0.699852
Target:  5'- --gGCCACagcgGCAgGC-CCGGGCCCGg -3'
miRNA:   3'- cagCGGUGga--CGUgUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 125690 0.68 0.698854
Target:  5'- -gCGCCACCUGCGCggguugcugcgcgGCGuCCGcGCCCc -3'
miRNA:   3'- caGCGGUGGACGUG-------------UGU-GGUcUGGGu -5'
5567 5' -58.5 NC_001806.1 + 72891 0.68 0.689852
Target:  5'- gGUCGgCACCggGCACGCuacucgGCCGGccuuCCCAa -3'
miRNA:   3'- -CAGCgGUGGa-CGUGUG------UGGUCu---GGGU- -5'
5567 5' -58.5 NC_001806.1 + 36829 0.68 0.689852
Target:  5'- -cCGcCCACCcagGcCGUACGCCGGGCCCAc -3'
miRNA:   3'- caGC-GGUGGa--C-GUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 84073 0.68 0.689852
Target:  5'- aGUCGgggccCCAgCUGCGCGCugCcgcggAGGCCCGu -3'
miRNA:   3'- -CAGC-----GGUgGACGUGUGugG-----UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21495 0.68 0.679805
Target:  5'- -aCGCCGCCgGCG---ACCGGGCCCc -3'
miRNA:   3'- caGCGGUGGaCGUgugUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 48099 0.68 0.679805
Target:  5'- cUC-CCAcCCUGCAUggcaACCAGGCCCGc -3'
miRNA:   3'- cAGcGGU-GGACGUGug--UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 100649 0.68 0.679805
Target:  5'- -cCGCCGCC-GCucgGC-CACCAGGCuCCAg -3'
miRNA:   3'- caGCGGUGGaCG---UGuGUGGUCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 120069 0.68 0.669719
Target:  5'- gGUCGCCuuuACCgcgcGCAUACAucuggcgugccuCCGGGCCCu -3'
miRNA:   3'- -CAGCGG---UGGa---CGUGUGU------------GGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 135587 0.68 0.669719
Target:  5'- gGUCgGCCGCgcgCUGCugGCGCUccaGGGCCCc -3'
miRNA:   3'- -CAG-CGGUG---GACGugUGUGG---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 69369 0.68 0.669719
Target:  5'- -aCGCCcucGCaCUGCACGCACUAccuuucGGCCCu -3'
miRNA:   3'- caGCGG---UG-GACGUGUGUGGU------CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 91772 0.68 0.668709
Target:  5'- -aCGCCGCCUucucggcccugaaGCGCGCGgaCGGAUCCGa -3'
miRNA:   3'- caGCGGUGGA-------------CGUGUGUg-GUCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.