miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 36340 0.74 0.328907
Target:  5'- cUC-CCGCCgaGgACGCGCCGGACCCAg -3'
miRNA:   3'- cAGcGGUGGa-CgUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2494 0.76 0.271788
Target:  5'- cGUCGCCGCCgccGCACGCGgCCugggcggcgggggcGGGCCCGg -3'
miRNA:   3'- -CAGCGGUGGa--CGUGUGU-GG--------------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 78840 0.77 0.231719
Target:  5'- cGUCGCCuCCUGCACGCcgACCuGaACCCGa -3'
miRNA:   3'- -CAGCGGuGGACGUGUG--UGGuC-UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 9990 0.8 0.144439
Target:  5'- --gGCCGCCUGC-CACGCCAGcCCCGg -3'
miRNA:   3'- cagCGGUGGACGuGUGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24615 0.82 0.114564
Target:  5'- -aCGCCGCCUGCGCGCGCUGGGgCCu -3'
miRNA:   3'- caGCGGUGGACGUGUGUGGUCUgGGu -5'
5567 5' -58.5 NC_001806.1 + 3805 0.72 0.417478
Target:  5'- --gGCCGCC-GCGUGCGCCAGGCCCc -3'
miRNA:   3'- cagCGGUGGaCGUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 26407 0.72 0.444037
Target:  5'- -cCGCCGCCcccgGC-CGC-CCGGGCCCAc -3'
miRNA:   3'- caGCGGUGGa---CGuGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 63888 0.7 0.548592
Target:  5'- aGUCGUuaaaCGCCUGCACGCAUa--GCCCGa -3'
miRNA:   3'- -CAGCG----GUGGACGUGUGUGgucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24445 0.7 0.538708
Target:  5'- -gCGCUACCgcgugcGCACGCGCUucGGCCCGg -3'
miRNA:   3'- caGCGGUGGa-----CGUGUGUGGu-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 1609 0.7 0.528885
Target:  5'- --gGCCGCagcgGCGCGC-CCAGGCCCc -3'
miRNA:   3'- cagCGGUGga--CGUGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 132269 0.7 0.528885
Target:  5'- -gCGCUAUUUGCGCGCgaauACCAGACUCu -3'
miRNA:   3'- caGCGGUGGACGUGUG----UGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 68363 0.7 0.527906
Target:  5'- --gGCCGCUgcuggaacaccugUGCGCGCuccACCGGGCCCAc -3'
miRNA:   3'- cagCGGUGG-------------ACGUGUG---UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23853 0.71 0.519129
Target:  5'- aUgGCgGCCUGgAUGCGCCAGAUCCc -3'
miRNA:   3'- cAgCGgUGGACgUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 125142 0.71 0.519129
Target:  5'- uGUC-CCGCCUGUGuCACACCA-ACCCGu -3'
miRNA:   3'- -CAGcGGUGGACGU-GUGUGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 70474 0.71 0.503672
Target:  5'- -gCGCCGCCUGUaugcgguggucggggACACGCCcGACCg- -3'
miRNA:   3'- caGCGGUGGACG---------------UGUGUGGuCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 58238 0.71 0.490312
Target:  5'- -cCGCCgACCUGCAguCGCCGGagcaccGCCCGc -3'
miRNA:   3'- caGCGG-UGGACGUguGUGGUC------UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 13626 0.71 0.47152
Target:  5'- --gGcCCGCCUGgaugugguaCACGCGCCGGACCCc -3'
miRNA:   3'- cagC-GGUGGAC---------GUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 124828 0.72 0.453099
Target:  5'- cGUCGCCccgaGCCUGgGCGUACCcguGACCCGg -3'
miRNA:   3'- -CAGCGG----UGGACgUGUGUGGu--CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 113960 0.72 0.453099
Target:  5'- --gGCCAgCUGCuGCACAacacCCAGGCCCGa -3'
miRNA:   3'- cagCGGUgGACG-UGUGU----GGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23201 0.72 0.44765
Target:  5'- -gCGCCcCCUGCuggcggcggcggccaGCGCACCGGACgCCGc -3'
miRNA:   3'- caGCGGuGGACG---------------UGUGUGGUCUG-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.