miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 23471 0.67 0.739201
Target:  5'- --gGCCGCCgcgGCGCAgGCCc-GCCCGc -3'
miRNA:   3'- cagCGGUGGa--CGUGUgUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 96638 0.67 0.729479
Target:  5'- cGUCGCCGCggGC-CACGCC--ACCCu -3'
miRNA:   3'- -CAGCGGUGgaCGuGUGUGGucUGGGu -5'
5567 5' -58.5 NC_001806.1 + 4319 0.67 0.729479
Target:  5'- cGUCGCgGCCgGC-CACcgccGCgCGGGCCCGg -3'
miRNA:   3'- -CAGCGgUGGaCGuGUG----UG-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 79703 0.67 0.739201
Target:  5'- -aCGCUcCCUgGCGCGCGCC--ACCCAg -3'
miRNA:   3'- caGCGGuGGA-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 1388 0.67 0.739201
Target:  5'- -cCGCCGCCaGCACGgugcCGCUGcGGCCCGu -3'
miRNA:   3'- caGCGGUGGaCGUGU----GUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 12783 0.67 0.758361
Target:  5'- -cUGCCGCCcaccGCGCcgGCgAUCAGGCCCAu -3'
miRNA:   3'- caGCGGUGGa---CGUG--UG-UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24203 0.67 0.728502
Target:  5'- -gUGCgCGCCUGCgACugGCCcgccgacGGGCCCGc -3'
miRNA:   3'- caGCG-GUGGACG-UGugUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21495 0.68 0.679805
Target:  5'- -aCGCCGCCgGCG---ACCGGGCCCc -3'
miRNA:   3'- caGCGGUGGaCGUgugUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 48099 0.68 0.679805
Target:  5'- cUC-CCAcCCUGCAUggcaACCAGGCCCGc -3'
miRNA:   3'- cAGcGGU-GGACGUGug--UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 69369 0.68 0.669719
Target:  5'- -aCGCCcucGCaCUGCACGCACUAccuuucGGCCCu -3'
miRNA:   3'- caGCGG---UG-GACGUGUGUGGU------CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 135587 0.68 0.669719
Target:  5'- gGUCgGCCGCgcgCUGCugGCGCUccaGGGCCCc -3'
miRNA:   3'- -CAG-CGGUG---GACGugUGUGG---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 120069 0.68 0.669719
Target:  5'- gGUCGCCuuuACCgcgcGCAUACAucuggcgugccuCCGGGCCCu -3'
miRNA:   3'- -CAGCGG---UGGa---CGUGUGU------------GGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 91772 0.68 0.668709
Target:  5'- -aCGCCGCCUucucggcccugaaGCGCGCGgaCGGAUCCGa -3'
miRNA:   3'- caGCGGUGGA-------------CGUGUGUg-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 75179 0.68 0.659603
Target:  5'- -gCGCCGCCgucGCA-ACGgCAGACCCu -3'
miRNA:   3'- caGCGGUGGa--CGUgUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 22742 0.68 0.659603
Target:  5'- -aCGCCGCCcGC-CACGCC-GACgCCGa -3'
miRNA:   3'- caGCGGUGGaCGuGUGUGGuCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 152060 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 350 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21899 0.68 0.649466
Target:  5'- --gGCCGCaucgaGCGC-CGCCGGGCCCGc -3'
miRNA:   3'- cagCGGUGga---CGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 83220 0.68 0.648451
Target:  5'- cGUCGCCGCCgacgugGuCAC-CGCCcccucaaGGGCCCGc -3'
miRNA:   3'- -CAGCGGUGGa-----C-GUGuGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 84073 0.68 0.689852
Target:  5'- aGUCGgggccCCAgCUGCGCGCugCcgcggAGGCCCGu -3'
miRNA:   3'- -CAGC-----GGUgGACGUGUGugG-----UCUGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.