miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 150941 0.66 0.76778
Target:  5'- -cCGCCACCcgGCGCcggaACCGaGCCCGg -3'
miRNA:   3'- caGCGGUGGa-CGUGug--UGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 26771 0.66 0.76778
Target:  5'- cUCGCCcuccGCCUGCGCGuCACCgcggAGcACCUg -3'
miRNA:   3'- cAGCGG----UGGACGUGU-GUGG----UC-UGGGu -5'
5567 5' -58.5 NC_001806.1 + 51251 0.66 0.76778
Target:  5'- -gCGUCACCaUGCA-GCGCCGGACgCGc -3'
miRNA:   3'- caGCGGUGG-ACGUgUGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 57001 0.66 0.786253
Target:  5'- -gCGCCGCauagGCgGCGC-CCAGugCCAg -3'
miRNA:   3'- caGCGGUGga--CG-UGUGuGGUCugGGU- -5'
5567 5' -58.5 NC_001806.1 + 21578 0.66 0.795289
Target:  5'- -cUGUCGCC-GCGCcCGCCGG-CCCAg -3'
miRNA:   3'- caGCGGUGGaCGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 27284 0.66 0.777081
Target:  5'- --gGCCGCCaGCGCG-GCgGGGCCCGg -3'
miRNA:   3'- cagCGGUGGaCGUGUgUGgUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 125819 0.66 0.786253
Target:  5'- gGUCGgCACCUaugGCGCcugacGCGCCgcGGGCCCc -3'
miRNA:   3'- -CAGCgGUGGA---CGUG-----UGUGG--UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 137352 0.66 0.795289
Target:  5'- -gCGCCAC--GCGCAUugCGG-CCCAa -3'
miRNA:   3'- caGCGGUGgaCGUGUGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 119890 0.67 0.739201
Target:  5'- -cCGCUGCUguccucgGCGCugGCCAcGGCCCu -3'
miRNA:   3'- caGCGGUGGa------CGUGugUGGU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 97287 0.67 0.748832
Target:  5'- gGUCGCaCACCga-ACACACCAGcuACgCCGc -3'
miRNA:   3'- -CAGCG-GUGGacgUGUGUGGUC--UG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 49347 0.67 0.709795
Target:  5'- aUCGCCGagcgucCCgGCAgCGCcCCGGGCCCGa -3'
miRNA:   3'- cAGCGGU------GGaCGU-GUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 26960 0.67 0.758361
Target:  5'- -cCGcCCGCCUG-GCGCGCCgcggcucguGGGCCCGc -3'
miRNA:   3'- caGC-GGUGGACgUGUGUGG---------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 91193 0.67 0.758361
Target:  5'- -aCGCCgucggggcguACCUgGCGCGCGCCgcgGGACUCGu -3'
miRNA:   3'- caGCGG----------UGGA-CGUGUGUGG---UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 47696 0.67 0.739201
Target:  5'- -cCGgCAgCUGCAC-CGCCAGGCgCAc -3'
miRNA:   3'- caGCgGUgGACGUGuGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 4319 0.67 0.729479
Target:  5'- cGUCGCgGCCgGC-CACcgccGCgCGGGCCCGg -3'
miRNA:   3'- -CAGCGgUGGaCGuGUG----UG-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24203 0.67 0.728502
Target:  5'- -gUGCgCGCCUGCgACugGCCcgccgacGGGCCCGc -3'
miRNA:   3'- caGCG-GUGGACG-UGugUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 152033 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 323 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21420 0.67 0.719674
Target:  5'- -cCGCgGCCUcGC-CGCcCCGGACCCc -3'
miRNA:   3'- caGCGgUGGA-CGuGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 145289 0.67 0.716718
Target:  5'- -aCGCCACUcgcgggugggcucgUGUuacaGCACACCAG-CCCGu -3'
miRNA:   3'- caGCGGUGG--------------ACG----UGUGUGGUCuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.