Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 58238 | 0.71 | 0.490312 |
Target: 5'- -cCGCCgACCUGCAguCGCCGGagcaccGCCCGc -3' miRNA: 3'- caGCGG-UGGACGUguGUGGUC------UGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 13626 | 0.71 | 0.47152 |
Target: 5'- --gGcCCGCCUGgaugugguaCACGCGCCGGACCCc -3' miRNA: 3'- cagC-GGUGGAC---------GUGUGUGGUCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 79092 | 0.74 | 0.359445 |
Target: 5'- cUCGCCGCCaGCGC-CACCgacgaGGACCCc -3' miRNA: 3'- cAGCGGUGGaCGUGuGUGG-----UCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 22620 | 0.74 | 0.350853 |
Target: 5'- cGUCGCCGCC-GC-CGCACCGGgcgagcgcgcgguGCCCGc -3' miRNA: 3'- -CAGCGGUGGaCGuGUGUGGUC-------------UGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 135644 | 0.74 | 0.343932 |
Target: 5'- gGUCGCgCuCCUGCAauuggguCGCCAGGCCCGc -3' miRNA: 3'- -CAGCG-GuGGACGUgu-----GUGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 36340 | 0.74 | 0.328907 |
Target: 5'- cUC-CCGCCgaGgACGCGCCGGACCCAg -3' miRNA: 3'- cAGcGGUGGa-CgUGUGUGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 2494 | 0.76 | 0.271788 |
Target: 5'- cGUCGCCGCCgccGCACGCGgCCugggcggcgggggcGGGCCCGg -3' miRNA: 3'- -CAGCGGUGGa--CGUGUGU-GG--------------UCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 78840 | 0.77 | 0.231719 |
Target: 5'- cGUCGCCuCCUGCACGCcgACCuGaACCCGa -3' miRNA: 3'- -CAGCGGuGGACGUGUG--UGGuC-UGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 9990 | 0.8 | 0.144439 |
Target: 5'- --gGCCGCCUGC-CACGCCAGcCCCGg -3' miRNA: 3'- cagCGGUGGACGuGUGUGGUCuGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 24615 | 0.82 | 0.114564 |
Target: 5'- -aCGCCGCCUGCGCGCGCUGGGgCCu -3' miRNA: 3'- caGCGGUGGACGUGUGUGGUCUgGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 61434 | 0.74 | 0.367382 |
Target: 5'- aUgGCCGCCaGCGC-CGCCGGGCUCAg -3' miRNA: 3'- cAgCGGUGGaCGUGuGUGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 23818 | 0.73 | 0.383616 |
Target: 5'- uUgGCCcCCUGCGCGCcUCGGGCCCGc -3' miRNA: 3'- cAgCGGuGGACGUGUGuGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 124828 | 0.72 | 0.453099 |
Target: 5'- cGUCGCCccgaGCCUGgGCGUACCcguGACCCGg -3' miRNA: 3'- -CAGCGG----UGGACgUGUGUGGu--CUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 113960 | 0.72 | 0.453099 |
Target: 5'- --gGCCAgCUGCuGCACAacacCCAGGCCCGa -3' miRNA: 3'- cagCGGUgGACG-UGUGU----GGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 23201 | 0.72 | 0.44765 |
Target: 5'- -gCGCCcCCUGCuggcggcggcggccaGCGCACCGGACgCCGc -3' miRNA: 3'- caGCGGuGGACG---------------UGUGUGGUCUG-GGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 26407 | 0.72 | 0.444037 |
Target: 5'- -cCGCCGCCcccgGC-CGC-CCGGGCCCAc -3' miRNA: 3'- caGCGGUGGa---CGuGUGuGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 3805 | 0.72 | 0.417478 |
Target: 5'- --gGCCGCC-GCGUGCGCCAGGCCCc -3' miRNA: 3'- cagCGGUGGaCGUGUGUGGUCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 147567 | 0.72 | 0.417478 |
Target: 5'- -gCGCCACCgucGCACGCGCCcggcacAGACUCu -3' miRNA: 3'- caGCGGUGGa--CGUGUGUGG------UCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 3658 | 0.72 | 0.417478 |
Target: 5'- cUCGUCAUCUGCGCcgGCGCCGGGgcucCCCGc -3' miRNA: 3'- cAGCGGUGGACGUG--UGUGGUCU----GGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 2405 | 0.73 | 0.408842 |
Target: 5'- --gGCCGCCaUGCgGCGCAgCGGGCCCGa -3' miRNA: 3'- cagCGGUGG-ACG-UGUGUgGUCUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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