Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 115615 | 0.66 | 0.777081 |
Target: 5'- -cCGCuCACCUGCGC-CAgC-GACCCc -3' miRNA: 3'- caGCG-GUGGACGUGuGUgGuCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 57001 | 0.66 | 0.786253 |
Target: 5'- -gCGCCGCauagGCgGCGC-CCAGugCCAg -3' miRNA: 3'- caGCGGUGga--CG-UGUGuGGUCugGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 26771 | 0.66 | 0.76778 |
Target: 5'- cUCGCCcuccGCCUGCGCGuCACCgcggAGcACCUg -3' miRNA: 3'- cAGCGG----UGGACGUGU-GUGG----UC-UGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 65837 | 0.66 | 0.795289 |
Target: 5'- -cCGCUGCCUGacgaauCGCACCgAGAgCCAa -3' miRNA: 3'- caGCGGUGGACgu----GUGUGG-UCUgGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 1877 | 0.66 | 0.795289 |
Target: 5'- -gCGCgGCCUcCACGCGCgcgaAGACCCc -3' miRNA: 3'- caGCGgUGGAcGUGUGUGg---UCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 97351 | 0.66 | 0.786253 |
Target: 5'- -gCGCgACCU-CAC-CACCAaGGCCCGg -3' miRNA: 3'- caGCGgUGGAcGUGuGUGGU-CUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 101209 | 0.66 | 0.76778 |
Target: 5'- --gGCCGCCcGCACcguauCCGGAUCCAa -3' miRNA: 3'- cagCGGUGGaCGUGugu--GGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 45138 | 0.66 | 0.76778 |
Target: 5'- aGUCGCCAUC-GUAC-C-CCcGACCCAa -3' miRNA: 3'- -CAGCGGUGGaCGUGuGuGGuCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 2931 | 0.66 | 0.777081 |
Target: 5'- -cCGCCGCCUcCGgGCGgCCGGGCCgGg -3' miRNA: 3'- caGCGGUGGAcGUgUGU-GGUCUGGgU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 33722 | 0.66 | 0.777081 |
Target: 5'- -cUGCCGCUugugagUGCGCGCGCCGG-CUCu -3' miRNA: 3'- caGCGGUGG------ACGUGUGUGGUCuGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 137352 | 0.66 | 0.795289 |
Target: 5'- -gCGCCAC--GCGCAUugCGG-CCCAa -3' miRNA: 3'- caGCGGUGgaCGUGUGugGUCuGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 72593 | 0.66 | 0.76778 |
Target: 5'- aGUCGCCGCCacCG-AC-CCGGGCCCGu -3' miRNA: 3'- -CAGCGGUGGacGUgUGuGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 104994 | 0.66 | 0.777081 |
Target: 5'- aUCGaCCGCCUgGCcaaACGCCAGcGCCCc -3' miRNA: 3'- cAGC-GGUGGA-CGug-UGUGGUC-UGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 27284 | 0.66 | 0.777081 |
Target: 5'- --gGCCGCCaGCGCG-GCgGGGCCCGg -3' miRNA: 3'- cagCGGUGGaCGUGUgUGgUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 51819 | 0.66 | 0.776156 |
Target: 5'- cGUgGCCgGCCUGCGCgACGCCcuccaucGGAUUCAg -3' miRNA: 3'- -CAgCGG-UGGACGUG-UGUGG-------UCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 150941 | 0.66 | 0.76778 |
Target: 5'- -cCGCCACCcgGCGCcggaACCGaGCCCGg -3' miRNA: 3'- caGCGGUGGa-CGUGug--UGGUcUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 86171 | 0.66 | 0.80418 |
Target: 5'- -aCGggACCUGCGCGCGgCGGGCCa- -3' miRNA: 3'- caGCggUGGACGUGUGUgGUCUGGgu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 68970 | 0.66 | 0.776156 |
Target: 5'- -cCGCC-CCUGUuggcgcaguuucaGCACACCGugcgggagaucGACCCGg -3' miRNA: 3'- caGCGGuGGACG-------------UGUGUGGU-----------CUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 125819 | 0.66 | 0.786253 |
Target: 5'- gGUCGgCACCUaugGCGCcugacGCGCCgcGGGCCCc -3' miRNA: 3'- -CAGCgGUGGA---CGUG-----UGUGG--UCUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 112243 | 0.66 | 0.777081 |
Target: 5'- --gGCCGCCUG-GC-CACCAGggugGCCCGg -3' miRNA: 3'- cagCGGUGGACgUGuGUGGUC----UGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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