miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 22742 0.68 0.659603
Target:  5'- -aCGCCGCCcGC-CACGCC-GACgCCGa -3'
miRNA:   3'- caGCGGUGGaCGuGUGUGGuCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 75179 0.68 0.659603
Target:  5'- -gCGCCGCCgucGCA-ACGgCAGACCCu -3'
miRNA:   3'- caGCGGUGGa--CGUgUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 350 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 152060 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21899 0.68 0.649466
Target:  5'- --gGCCGCaucgaGCGC-CGCCGGGCCCGc -3'
miRNA:   3'- cagCGGUGga---CGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 83220 0.68 0.648451
Target:  5'- cGUCGCCGCCgacgugGuCAC-CGCCcccucaaGGGCCCGc -3'
miRNA:   3'- -CAGCGGUGGa-----C-GUGuGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 93002 0.69 0.639315
Target:  5'- uUCGCCAgCUGCAaccuGCugCGG-CCCGu -3'
miRNA:   3'- cAGCGGUgGACGUg---UGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 85465 0.69 0.639315
Target:  5'- -cCGcCCACCUGCAC-UACCGG-CUCAu -3'
miRNA:   3'- caGC-GGUGGACGUGuGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 86477 0.69 0.639315
Target:  5'- -aCGCgCAgUUGUuuuuGCGCACCAGAUCCAc -3'
miRNA:   3'- caGCG-GUgGACG----UGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 80976 0.69 0.638299
Target:  5'- -aCGCUACgUGCaACGCACCGGucguagcGCCCu -3'
miRNA:   3'- caGCGGUGgACG-UGUGUGGUC-------UGGGu -5'
5567 5' -58.5 NC_001806.1 + 20107 0.69 0.629158
Target:  5'- -gCGCCGUCUGCGggcgucgguCGCGCCGGGCCUu -3'
miRNA:   3'- caGCGGUGGACGU---------GUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 101722 0.69 0.619004
Target:  5'- -gUGCCugCUGCGC-CAgCAGGCCa- -3'
miRNA:   3'- caGCGGugGACGUGuGUgGUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 111170 0.69 0.608859
Target:  5'- -cUGCCGCCcaccgauccccUGCGCACA-CGGGCCCu -3'
miRNA:   3'- caGCGGUGG-----------ACGUGUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 1545 0.69 0.608859
Target:  5'- -cCGCgGCCcGCGC-CACCGGGCCgGg -3'
miRNA:   3'- caGCGgUGGaCGUGuGUGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 76574 0.69 0.608859
Target:  5'- --gGCCGC--GCGCgaGCGCCGGGCCCAg -3'
miRNA:   3'- cagCGGUGgaCGUG--UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 63470 0.69 0.608859
Target:  5'- cGUgGCCGCaCUGCGCACAaugccaUAGGCCa- -3'
miRNA:   3'- -CAgCGGUG-GACGUGUGUg-----GUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 136778 0.69 0.59772
Target:  5'- aUCGCCGCCUGCAgcugccgggugguCGCcucGCUGGACCgGa -3'
miRNA:   3'- cAGCGGUGGACGU-------------GUG---UGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 134842 0.69 0.588629
Target:  5'- gGUCGCCgACCUG-GCGCACCucgcAGGCCa- -3'
miRNA:   3'- -CAGCGG-UGGACgUGUGUGG----UCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 68570 0.69 0.588629
Target:  5'- -cCGCCgGCCUGCGCAcCGCgGcGGCCCu -3'
miRNA:   3'- caGCGG-UGGACGUGU-GUGgU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 131191 0.7 0.578557
Target:  5'- aUCGaCCACa-GCGCcUGCCGGACCCAc -3'
miRNA:   3'- cAGC-GGUGgaCGUGuGUGGUCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.