miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 120069 0.68 0.669719
Target:  5'- gGUCGCCuuuACCgcgcGCAUACAucuggcgugccuCCGGGCCCu -3'
miRNA:   3'- -CAGCGG---UGGa---CGUGUGU------------GGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 119890 0.67 0.739201
Target:  5'- -cCGCUGCUguccucgGCGCugGCCAcGGCCCu -3'
miRNA:   3'- caGCGGUGGa------CGUGugUGGU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 116004 0.66 0.80418
Target:  5'- gGUCGCCcgucUCUGC-UACGCCGcuGACCCc -3'
miRNA:   3'- -CAGCGGu---GGACGuGUGUGGU--CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 115615 0.66 0.777081
Target:  5'- -cCGCuCACCUGCGC-CAgC-GACCCc -3'
miRNA:   3'- caGCG-GUGGACGUGuGUgGuCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 113960 0.72 0.453099
Target:  5'- --gGCCAgCUGCuGCACAacacCCAGGCCCGa -3'
miRNA:   3'- cagCGGUgGACG-UGUGU----GGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 112243 0.66 0.777081
Target:  5'- --gGCCGCCUG-GC-CACCAGggugGCCCGg -3'
miRNA:   3'- cagCGGUGGACgUGuGUGGUC----UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 111170 0.69 0.608859
Target:  5'- -cUGCCGCCcaccgauccccUGCGCACA-CGGGCCCu -3'
miRNA:   3'- caGCGGUGG-----------ACGUGUGUgGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 104994 0.66 0.777081
Target:  5'- aUCGaCCGCCUgGCcaaACGCCAGcGCCCc -3'
miRNA:   3'- cAGC-GGUGGA-CGug-UGUGGUC-UGGGu -5'
5567 5' -58.5 NC_001806.1 + 101722 0.69 0.619004
Target:  5'- -gUGCCugCUGCGC-CAgCAGGCCa- -3'
miRNA:   3'- caGCGGugGACGUGuGUgGUCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 101209 0.66 0.76778
Target:  5'- --gGCCGCCcGCACcguauCCGGAUCCAa -3'
miRNA:   3'- cagCGGUGGaCGUGugu--GGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 100649 0.68 0.679805
Target:  5'- -cCGCCGCC-GCucgGC-CACCAGGCuCCAg -3'
miRNA:   3'- caGCGGUGGaCG---UGuGUGGUCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 97351 0.66 0.786253
Target:  5'- -gCGCgACCU-CAC-CACCAaGGCCCGg -3'
miRNA:   3'- caGCGgUGGAcGUGuGUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 97287 0.67 0.748832
Target:  5'- gGUCGCaCACCga-ACACACCAGcuACgCCGc -3'
miRNA:   3'- -CAGCG-GUGGacgUGUGUGGUC--UG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 96638 0.67 0.729479
Target:  5'- cGUCGCCGCggGC-CACGCC--ACCCu -3'
miRNA:   3'- -CAGCGGUGgaCGuGUGUGGucUGGGu -5'
5567 5' -58.5 NC_001806.1 + 93002 0.69 0.639315
Target:  5'- uUCGCCAgCUGCAaccuGCugCGG-CCCGu -3'
miRNA:   3'- cAGCGGUgGACGUg---UGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 92495 0.7 0.578557
Target:  5'- gGUCGCCAgCCUccagaGCGCcUACCAGaaGCCCGa -3'
miRNA:   3'- -CAGCGGU-GGA-----CGUGuGUGGUC--UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 91772 0.68 0.668709
Target:  5'- -aCGCCGCCUucucggcccugaaGCGCGCGgaCGGAUCCGa -3'
miRNA:   3'- caGCGGUGGA-------------CGUGUGUg-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 91193 0.67 0.758361
Target:  5'- -aCGCCgucggggcguACCUgGCGCGCGCCgcgGGACUCGu -3'
miRNA:   3'- caGCGG----------UGGA-CGUGUGUGG---UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 90418 0.66 0.795289
Target:  5'- -cCGgCACCUGgaccccaGCAC-CCAGGCCCc -3'
miRNA:   3'- caGCgGUGGACg------UGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 86477 0.69 0.639315
Target:  5'- -aCGCgCAgUUGUuuuuGCGCACCAGAUCCAc -3'
miRNA:   3'- caGCG-GUgGACG----UGUGUGGUCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.