Results 41 - 60 of 114 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 86171 | 0.66 | 0.80418 |
Target: 5'- -aCGggACCUGCGCGCGgCGGGCCa- -3' miRNA: 3'- caGCggUGGACGUGUGUgGUCUGGgu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 85465 | 0.69 | 0.639315 |
Target: 5'- -cCGcCCACCUGCAC-UACCGG-CUCAu -3' miRNA: 3'- caGC-GGUGGACGUGuGUGGUCuGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 84073 | 0.68 | 0.689852 |
Target: 5'- aGUCGgggccCCAgCUGCGCGCugCcgcggAGGCCCGu -3' miRNA: 3'- -CAGC-----GGUgGACGUGUGugG-----UCUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 83220 | 0.68 | 0.648451 |
Target: 5'- cGUCGCCGCCgacgugGuCAC-CGCCcccucaaGGGCCCGc -3' miRNA: 3'- -CAGCGGUGGa-----C-GUGuGUGG-------UCUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 80976 | 0.69 | 0.638299 |
Target: 5'- -aCGCUACgUGCaACGCACCGGucguagcGCCCu -3' miRNA: 3'- caGCGGUGgACG-UGUGUGGUC-------UGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 80350 | 0.7 | 0.578557 |
Target: 5'- cGUCaGCCGCCUGUcCGCGCCccaaccccAGcCCCAg -3' miRNA: 3'- -CAG-CGGUGGACGuGUGUGG--------UCuGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 79703 | 0.67 | 0.739201 |
Target: 5'- -aCGCUcCCUgGCGCGCGCC--ACCCAg -3' miRNA: 3'- caGCGGuGGA-CGUGUGUGGucUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 79092 | 0.74 | 0.359445 |
Target: 5'- cUCGCCGCCaGCGC-CACCgacgaGGACCCc -3' miRNA: 3'- cAGCGGUGGaCGUGuGUGG-----UCUGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 78840 | 0.77 | 0.231719 |
Target: 5'- cGUCGCCuCCUGCACGCcgACCuGaACCCGa -3' miRNA: 3'- -CAGCGGuGGACGUGUG--UGGuC-UGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 76574 | 0.69 | 0.608859 |
Target: 5'- --gGCCGC--GCGCgaGCGCCGGGCCCAg -3' miRNA: 3'- cagCGGUGgaCGUG--UGUGGUCUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 75179 | 0.68 | 0.659603 |
Target: 5'- -gCGCCGCCgucGCA-ACGgCAGACCCu -3' miRNA: 3'- caGCGGUGGa--CGUgUGUgGUCUGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 72891 | 0.68 | 0.689852 |
Target: 5'- gGUCGgCACCggGCACGCuacucgGCCGGccuuCCCAa -3' miRNA: 3'- -CAGCgGUGGa-CGUGUG------UGGUCu---GGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 72593 | 0.66 | 0.76778 |
Target: 5'- aGUCGCCGCCacCG-AC-CCGGGCCCGu -3' miRNA: 3'- -CAGCGGUGGacGUgUGuGGUCUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 70474 | 0.71 | 0.503672 |
Target: 5'- -gCGCCGCCUGUaugcgguggucggggACACGCCcGACCg- -3' miRNA: 3'- caGCGGUGGACG---------------UGUGUGGuCUGGgu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 69369 | 0.68 | 0.669719 |
Target: 5'- -aCGCCcucGCaCUGCACGCACUAccuuucGGCCCu -3' miRNA: 3'- caGCGG---UG-GACGUGUGUGGU------CUGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 68970 | 0.66 | 0.776156 |
Target: 5'- -cCGCC-CCUGUuggcgcaguuucaGCACACCGugcgggagaucGACCCGg -3' miRNA: 3'- caGCGGuGGACG-------------UGUGUGGU-----------CUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 68570 | 0.69 | 0.588629 |
Target: 5'- -cCGCCgGCCUGCGCAcCGCgGcGGCCCu -3' miRNA: 3'- caGCGG-UGGACGUGU-GUGgU-CUGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 68363 | 0.7 | 0.527906 |
Target: 5'- --gGCCGCUgcuggaacaccugUGCGCGCuccACCGGGCCCAc -3' miRNA: 3'- cagCGGUGG-------------ACGUGUG---UGGUCUGGGU- -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 67164 | 0.67 | 0.709795 |
Target: 5'- gGUCGCCuCCaucaGCugGCcCCAGGCCUc -3' miRNA: 3'- -CAGCGGuGGa---CGugUGuGGUCUGGGu -5' |
|||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 67091 | 0.67 | 0.739201 |
Target: 5'- -cCGCCACCagGaaguuaaACgACACUAGGCCCGc -3' miRNA: 3'- caGCGGUGGa-Cg------UG-UGUGGUCUGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home