miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 152060 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 152033 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 150941 0.66 0.76778
Target:  5'- -cCGCCACCcgGCGCcggaACCGaGCCCGg -3'
miRNA:   3'- caGCGGUGGa-CGUGug--UGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 150862 0.66 0.795289
Target:  5'- uUCGCCggGCCgGCuccGCGgGCCAgGGCCCGg -3'
miRNA:   3'- cAGCGG--UGGaCG---UGUgUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 147567 0.72 0.417478
Target:  5'- -gCGCCACCgucGCACGCGCCcggcacAGACUCu -3'
miRNA:   3'- caGCGGUGGa--CGUGUGUGG------UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 145289 0.67 0.716718
Target:  5'- -aCGCCACUcgcgggugggcucgUGUuacaGCACACCAG-CCCGu -3'
miRNA:   3'- caGCGGUGG--------------ACG----UGUGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 139451 0.7 0.558532
Target:  5'- gGUCGCCAUCUGCuuuACGC-CCGGcaACCUg -3'
miRNA:   3'- -CAGCGGUGGACG---UGUGuGGUC--UGGGu -5'
5567 5' -58.5 NC_001806.1 + 137352 0.66 0.795289
Target:  5'- -gCGCCAC--GCGCAUugCGG-CCCAa -3'
miRNA:   3'- caGCGGUGgaCGUGUGugGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 136778 0.69 0.59772
Target:  5'- aUCGCCGCCUGCAgcugccgggugguCGCcucGCUGGACCgGa -3'
miRNA:   3'- cAGCGGUGGACGU-------------GUG---UGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 135644 0.74 0.343932
Target:  5'- gGUCGCgCuCCUGCAauuggguCGCCAGGCCCGc -3'
miRNA:   3'- -CAGCG-GuGGACGUgu-----GUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 135587 0.68 0.669719
Target:  5'- gGUCgGCCGCgcgCUGCugGCGCUccaGGGCCCc -3'
miRNA:   3'- -CAG-CGGUG---GACGugUGUGG---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 134842 0.69 0.588629
Target:  5'- gGUCGCCgACCUG-GCGCACCucgcAGGCCa- -3'
miRNA:   3'- -CAGCGG-UGGACgUGUGUGG----UCUGGgu -5'
5567 5' -58.5 NC_001806.1 + 132269 0.7 0.528885
Target:  5'- -gCGCUAUUUGCGCGCgaauACCAGACUCu -3'
miRNA:   3'- caGCGGUGGACGUGUG----UGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 131567 0.68 0.699852
Target:  5'- -cCGUCACCgguuuccGCgACcCACCGGGCCCGg -3'
miRNA:   3'- caGCGGUGGa------CG-UGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 131191 0.7 0.578557
Target:  5'- aUCGaCCACa-GCGCcUGCCGGACCCAc -3'
miRNA:   3'- cAGC-GGUGgaCGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 128825 1.08 0.001779
Target:  5'- cGUCGCCACCUGCACACACCAGACCCAc -3'
miRNA:   3'- -CAGCGGUGGACGUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 125819 0.66 0.786253
Target:  5'- gGUCGgCACCUaugGCGCcugacGCGCCgcGGGCCCc -3'
miRNA:   3'- -CAGCgGUGGA---CGUG-----UGUGG--UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 125690 0.68 0.698854
Target:  5'- -gCGCCACCUGCGCggguugcugcgcgGCGuCCGcGCCCc -3'
miRNA:   3'- caGCGGUGGACGUG-------------UGU-GGUcUGGGu -5'
5567 5' -58.5 NC_001806.1 + 125142 0.71 0.519129
Target:  5'- uGUC-CCGCCUGUGuCACACCA-ACCCGu -3'
miRNA:   3'- -CAGcGGUGGACGU-GUGUGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 124828 0.72 0.453099
Target:  5'- cGUCGCCccgaGCCUGgGCGUACCcguGACCCGg -3'
miRNA:   3'- -CAGCGG----UGGACgUGUGUGGu--CUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.