Results 61 - 80 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 151537 | 0.68 | 0.346533 |
Target: 5'- gCGCCcGUGGGCCCgggcggCCGGGGGCGgCg- -3' miRNA: 3'- -GUGGcCGCCUGGG------GGCCUCCGCgGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 28704 | 0.68 | 0.346533 |
Target: 5'- aCGCCGuG-GGACCCCCGacuccGGuGCGUCUGg -3' miRNA: 3'- -GUGGC-CgCCUGGGGGCc----UC-CGCGGAC- -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 87295 | 0.68 | 0.346533 |
Target: 5'- uGCCGGCGGuCUCCCGc--GCGCCc- -3' miRNA: 3'- gUGGCCGCCuGGGGGCcucCGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 25422 | 0.68 | 0.346533 |
Target: 5'- gGgCGGUGGuggugcgcgggcGCCCCCGGAGG-GUUUGg -3' miRNA: 3'- gUgGCCGCC------------UGGGGGCCUCCgCGGAC- -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 21498 | 0.68 | 0.346533 |
Target: 5'- cCGCCGGCGaccGGgCCCCGGcccGGgGCCg- -3' miRNA: 3'- -GUGGCCGC---CUgGGGGCCu--CCgCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 3668 | 0.68 | 0.344382 |
Target: 5'- gCGCCGGCGccggggcuccccgcGGCCCCCGucaGCGCCg- -3' miRNA: 3'- -GUGGCCGC--------------CUGGGGGCcucCGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 70362 | 0.68 | 0.338694 |
Target: 5'- uCGCCGaGCGcgcaGACCCCCugauucgccaacuGGAGGaCGCCa- -3' miRNA: 3'- -GUGGC-CGC----CUGGGGG-------------CCUCC-GCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 19887 | 0.68 | 0.335173 |
Target: 5'- gACCGGUggguuucugucgucgGaGGCCCCCGGGGuGCGUCc- -3' miRNA: 3'- gUGGCCG---------------C-CUGGGGGCCUC-CGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 22633 | 0.68 | 0.332376 |
Target: 5'- gCACCGggcgagcgcGCGGuGCCCgCCGGGuacGGCGCCg- -3' miRNA: 3'- -GUGGC---------CGCC-UGGG-GGCCU---CCGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 78671 | 0.68 | 0.332376 |
Target: 5'- uGCUGGCGGcaguGCUCCUGGGcGCGCCc- -3' miRNA: 3'- gUGGCCGCC----UGGGGGCCUcCGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 22825 | 0.68 | 0.325458 |
Target: 5'- uGCC-GCGGGaUCCUGGAGGCGCUg- -3' miRNA: 3'- gUGGcCGCCUgGGGGCCUCCGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 4432 | 0.68 | 0.325458 |
Target: 5'- gGCCcgGGCGGGggcggcguCCgCCCGGGGGCuGCCg- -3' miRNA: 3'- gUGG--CCGCCU--------GG-GGGCCUCCG-CGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 32534 | 0.68 | 0.318648 |
Target: 5'- aCACCGGCcGACCCCCuGGcGGUcuuccaGCCg- -3' miRNA: 3'- -GUGGCCGcCUGGGGG-CCuCCG------CGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 2818 | 0.68 | 0.318648 |
Target: 5'- ---gGGCGGGCucgggCCCCGGGGGCGUg-- -3' miRNA: 3'- guggCCGCCUG-----GGGGCCUCCGCGgac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 33814 | 0.69 | 0.311945 |
Target: 5'- gGCgGGUGGACUCgCGGGGG-GCCg- -3' miRNA: 3'- gUGgCCGCCUGGGgGCCUCCgCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 144986 | 0.69 | 0.311945 |
Target: 5'- -cCCGGCGGACCCaaGG-GGCcCCg- -3' miRNA: 3'- guGGCCGCCUGGGggCCuCCGcGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 26529 | 0.69 | 0.311945 |
Target: 5'- cCGCCGGUGGGCCCCCGccuucuuGuucgcugcugcuGCGCCa- -3' miRNA: 3'- -GUGGCCGCCUGGGGGCcu-----C------------CGCGGac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 22060 | 0.69 | 0.307975 |
Target: 5'- -cCCGGCgccGGGCCCCCGcccccGGGGCgggugcuguacggcgGCCUGg -3' miRNA: 3'- guGGCCG---CCUGGGGGC-----CUCCG---------------CGGAC- -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 21194 | 0.69 | 0.30535 |
Target: 5'- gAgCGGgGGGCCCUCGGgugGGGCGCg-- -3' miRNA: 3'- gUgGCCgCCUGGGGGCC---UCCGCGgac -5' |
|||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 13753 | 0.69 | 0.30535 |
Target: 5'- uUugCuGCGGACCCCaUGGAGGC-CCa- -3' miRNA: 3'- -GugGcCGCCUGGGG-GCCUCCGcGGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home