miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 147778 0.67 0.376123
Target:  5'- gACgCGGgGGGCCCggggCgGGGGGCggaGCCUGg -3'
miRNA:   3'- gUG-GCCgCCUGGG----GgCCUCCG---CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 72532 0.67 0.376123
Target:  5'- -gUCGGCguGGGCCCCCGGgaggggguaGGGgGCCc- -3'
miRNA:   3'- guGGCCG--CCUGGGGGCC---------UCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 4936 0.67 0.376123
Target:  5'- uCGCCGGCgucGGugCCCgccgCGGGGGC-CCUc -3'
miRNA:   3'- -GUGGCCG---CCugGGG----GCCUCCGcGGAc -5'
5569 3' -66.8 NC_001806.1 + 51227 0.67 0.376123
Target:  5'- gACCGGCGGGuCCCgaCCGaacGGGCGUCa- -3'
miRNA:   3'- gUGGCCGCCU-GGG--GGCc--UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 9328 0.67 0.368568
Target:  5'- gACCGacGUGGGgCCUCGGgaugGGGCGCCUu -3'
miRNA:   3'- gUGGC--CGCCUgGGGGCC----UCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 13269 0.67 0.368568
Target:  5'- uGCCGGCGGuCUCaaacgCGGGGGCGUg-- -3'
miRNA:   3'- gUGGCCGCCuGGGg----GCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 126421 0.67 0.368568
Target:  5'- aCACCGGU----CCCCGGAGGCGUUc- -3'
miRNA:   3'- -GUGGCCGccugGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 46104 0.67 0.368568
Target:  5'- -uCCGGCccgGGGCCUgCGcGGGCGCCUc -3'
miRNA:   3'- guGGCCG---CCUGGGgGCcUCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 73993 0.67 0.368568
Target:  5'- gGCCGGgGcGGCCCCgcaGGGGGCuCCg- -3'
miRNA:   3'- gUGGCCgC-CUGGGGg--CCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 78043 0.67 0.366322
Target:  5'- gCGCUGGUGGccaGCuCCCCGGaacAcauuuacaccuuuuGGCGCCUGg -3'
miRNA:   3'- -GUGGCCGCC---UG-GGGGCC---U--------------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 20715 0.67 0.361117
Target:  5'- ---gGGUGGGCCCgCCGGGGGgGCg-- -3'
miRNA:   3'- guggCCGCCUGGG-GGCCUCCgCGgac -5'
5569 3' -66.8 NC_001806.1 + 22572 0.67 0.361117
Target:  5'- gGCCGcGgGGAgCCCCGGcgccGGCGCagaUGa -3'
miRNA:   3'- gUGGC-CgCCUgGGGGCCu---CCGCGg--AC- -5'
5569 3' -66.8 NC_001806.1 + 30723 0.67 0.361117
Target:  5'- -cUCGGCcccGACCCCCgcGGGGGcCGCCUc -3'
miRNA:   3'- guGGCCGc--CUGGGGG--CCUCC-GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 46055 0.67 0.361117
Target:  5'- aCAcCCGGaGGuCCCCCGGAcgcGGCGUCc- -3'
miRNA:   3'- -GU-GGCCgCCuGGGGGCCU---CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 32982 0.67 0.361117
Target:  5'- cCGCCGGggccccgggcCGGGCCgCCaCGGGGGCcgGCCg- -3'
miRNA:   3'- -GUGGCC----------GCCUGG-GG-GCCUCCG--CGGac -5'
5569 3' -66.8 NC_001806.1 + 81463 0.67 0.361117
Target:  5'- cCGCaCGGCcccuugGGugCCCUGGGGGUGCg-- -3'
miRNA:   3'- -GUG-GCCG------CCugGGGGCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 108044 0.67 0.361117
Target:  5'- uCGCCGcCGGGCCgaCGGAgGGCGCCc- -3'
miRNA:   3'- -GUGGCcGCCUGGggGCCU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 43272 0.67 0.360378
Target:  5'- -uCCGcGCGGccguuccGCCCUCGGAGGCggaGCCg- -3'
miRNA:   3'- guGGC-CGCC-------UGGGGGCCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 96374 0.68 0.353772
Target:  5'- gCGCCaGgGcGCCCCCgcgcGGGGGCGCCg- -3'
miRNA:   3'- -GUGGcCgCcUGGGGG----CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 20648 0.68 0.353772
Target:  5'- gGCCGcggccaCGGGCCCCCGGcgugccGGCGUCg- -3'
miRNA:   3'- gUGGCc-----GCCUGGGGGCCu-----CCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.