miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 26389 0.69 0.303392
Target:  5'- cCGCCGccaucGCGGcccccgccGCCCCCGGccgcccgggcccacGGGCGCCg- -3'
miRNA:   3'- -GUGGC-----CGCC--------UGGGGGCC--------------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 26529 0.69 0.311945
Target:  5'- cCGCCGGUGGGCCCCCGccuucuuGuucgcugcugcuGCGCCa- -3'
miRNA:   3'- -GUGGCCGCCUGGGGGCcu-----C------------CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 26699 0.67 0.391545
Target:  5'- -cCCGGCGuGGgCCCgGGGGGCGgggCUGa -3'
miRNA:   3'- guGGCCGC-CUgGGGgCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 27242 0.72 0.190823
Target:  5'- uCACagGGCGGGCCgCCuCGGGGGCGggaCUGg -3'
miRNA:   3'- -GUGg-CCGCCUGG-GG-GCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 27772 0.71 0.209271
Target:  5'- aCACCGGguUGGGCCCCCaaaucGGGGGCcggGCCg- -3'
miRNA:   3'- -GUGGCC--GCCUGGGGG-----CCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 28150 0.66 0.452038
Target:  5'- cCGCCGGCcugaGGGCCgCCCccagcgcgaggugagGGgccGGGCGCCa- -3'
miRNA:   3'- -GUGGCCG----CCUGG-GGG---------------CC---UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 28272 0.69 0.292482
Target:  5'- aACCGGCcgccauguugggGGACCCCCacucauacacgGGAgccgGGCGCCa- -3'
miRNA:   3'- gUGGCCG------------CCUGGGGG-----------CCU----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 28704 0.68 0.346533
Target:  5'- aCGCCGuG-GGACCCCCGacuccGGuGCGUCUGg -3'
miRNA:   3'- -GUGGC-CgCCUGGGGGCc----UC-CGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 29769 0.67 0.381474
Target:  5'- -cCCGcCGGACgCCCCGcgcccccccacgcaGAGGCGCCg- -3'
miRNA:   3'- guGGCcGCCUG-GGGGC--------------CUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 29961 0.69 0.280041
Target:  5'- aGCC-GCGGcGCCgCgGGGGGCGUCUGg -3'
miRNA:   3'- gUGGcCGCC-UGGgGgCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 30299 0.66 0.440198
Target:  5'- aGCCGGCcGcccGCCCCgCGGAcGcGCGCCg- -3'
miRNA:   3'- gUGGCCGcC---UGGGG-GCCU-C-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 30723 0.67 0.361117
Target:  5'- -cUCGGCcccGACCCCCgcGGGGGcCGCCUc -3'
miRNA:   3'- guGGCCGc--CUGGGGG--CCUCC-GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 32534 0.68 0.318648
Target:  5'- aCACCGGCcGACCCCCuGGcGGUcuuccaGCCg- -3'
miRNA:   3'- -GUGGCCGcCUGGGGG-CCuCCG------CGGac -5'
5569 3' -66.8 NC_001806.1 + 32982 0.67 0.361117
Target:  5'- cCGCCGGggccccgggcCGGGCCgCCaCGGGGGCcgGCCg- -3'
miRNA:   3'- -GUGGCC----------GCCUGG-GG-GCCUCCG--CGGac -5'
5569 3' -66.8 NC_001806.1 + 33057 0.66 0.415435
Target:  5'- gGCCGGgaaccCGGaaaaGCCUCCGGGGG-GCCUu -3'
miRNA:   3'- gUGGCC-----GCC----UGGGGGCCUCCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 33814 0.69 0.311945
Target:  5'- gGCgGGUGGACUCgCGGGGG-GCCg- -3'
miRNA:   3'- gUGgCCGCCUGGGgGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 38273 0.72 0.195297
Target:  5'- gACgGGCGGACCgCCGGGcgagcGGCGUCg- -3'
miRNA:   3'- gUGgCCGCCUGGgGGCCU-----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 43272 0.67 0.360378
Target:  5'- -uCCGcGCGGccguuccGCCCUCGGAGGCggaGCCg- -3'
miRNA:   3'- guGGC-CGCC-------UGGGGGCCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 43504 0.66 0.423595
Target:  5'- gGCCguGGCGG-CCCaucaGGAcaagaugcGGCGCCUGg -3'
miRNA:   3'- gUGG--CCGCCuGGGgg--CCU--------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 45372 0.66 0.428537
Target:  5'- aCACUGGCcaaaugucugCCCCGGGGGC-CCUGg -3'
miRNA:   3'- -GUGGCCGccug------GGGGCCUCCGcGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.