miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 13753 0.69 0.30535
Target:  5'- uUugCuGCGGACCCCaUGGAGGC-CCa- -3'
miRNA:   3'- -GugGcCGCCUGGGG-GCCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 17158 0.66 0.457165
Target:  5'- uGCCGGUcgcuccaaGGGCCCCCccgGGAaGGCggGUCUGu -3'
miRNA:   3'- gUGGCCG--------CCUGGGGG---CCU-CCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 19887 0.68 0.335173
Target:  5'- gACCGGUggguuucugucgucgGaGGCCCCCGGGGuGCGUCc- -3'
miRNA:   3'- gUGGCCG---------------C-CUGGGGGCCUC-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 20393 0.66 0.43185
Target:  5'- -uCCGGCGGGCgggaCCgGGGGGC-CCg- -3'
miRNA:   3'- guGGCCGCCUGg---GGgCCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 20648 0.68 0.353772
Target:  5'- gGCCGcggccaCGGGCCCCCGGcgugccGGCGUCg- -3'
miRNA:   3'- gUGGCc-----GCCUGGGGGCCu-----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 20715 0.67 0.361117
Target:  5'- ---gGGUGGGCCCgCCGGGGGgGCg-- -3'
miRNA:   3'- guggCCGCCUGGG-GGCCUCCgCGgac -5'
5569 3' -66.8 NC_001806.1 + 21194 0.69 0.30535
Target:  5'- gAgCGGgGGGCCCUCGGgugGGGCGCg-- -3'
miRNA:   3'- gUgGCCgCCUGGGGGCC---UCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 21498 0.68 0.346533
Target:  5'- cCGCCGGCGaccGGgCCCCGGcccGGgGCCg- -3'
miRNA:   3'- -GUGGCCGC---CUgGGGGCCu--CCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 21794 0.73 0.158179
Target:  5'- gCGCCGGCaG-CCCCCGGGcGGaCGCCg- -3'
miRNA:   3'- -GUGGCCGcCuGGGGGCCU-CC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 22060 0.69 0.307975
Target:  5'- -cCCGGCgccGGGCCCCCGcccccGGGGCgggugcuguacggcgGCCUGg -3'
miRNA:   3'- guGGCCG---CCUGGGGGC-----CUCCG---------------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 22114 0.69 0.273981
Target:  5'- aGCCGccCGGGCCUCUgGGGGGCGCCc- -3'
miRNA:   3'- gUGGCc-GCCUGGGGG-CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 22158 0.71 0.229236
Target:  5'- aCGCCGGUucgaggccucGGGCgCCCCGGcggccguguGGGCGCCc- -3'
miRNA:   3'- -GUGGCCG----------CCUG-GGGGCC---------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 22572 0.67 0.361117
Target:  5'- gGCCGcGgGGAgCCCCGGcgccGGCGCagaUGa -3'
miRNA:   3'- gUGGC-CgCCUgGGGGCCu---CCGCGg--AC- -5'
5569 3' -66.8 NC_001806.1 + 22633 0.68 0.332376
Target:  5'- gCACCGggcgagcgcGCGGuGCCCgCCGGGuacGGCGCCg- -3'
miRNA:   3'- -GUGGC---------CGCC-UGGG-GGCCU---CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 22825 0.68 0.325458
Target:  5'- uGCC-GCGGGaUCCUGGAGGCGCUg- -3'
miRNA:   3'- gUGGcCGCCUgGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 23309 0.7 0.250787
Target:  5'- -cCCGGCccGGCCgCCCGGAGGCGgCg- -3'
miRNA:   3'- guGGCCGc-CUGG-GGGCCUCCGCgGac -5'
5569 3' -66.8 NC_001806.1 + 23547 0.74 0.131928
Target:  5'- gGCUGGCGGcggcaGCCCCCGGGgcccagccacacggcGGCGCCc- -3'
miRNA:   3'- gUGGCCGCC-----UGGGGGCCU---------------CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 23936 0.69 0.286208
Target:  5'- gGCCGGCGGcggggCCUGGGGGgGCCg- -3'
miRNA:   3'- gUGGCCGCCugg--GGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 24928 0.69 0.292482
Target:  5'- --gCGGCGGGaaguuguggaCUgGGAGGCGCCUGg -3'
miRNA:   3'- gugGCCGCCUgg--------GGgCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 25422 0.68 0.346533
Target:  5'- gGgCGGUGGuggugcgcgggcGCCCCCGGAGG-GUUUGg -3'
miRNA:   3'- gUgGCCGCC------------UGGGGGCCUCCgCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.