miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 119589 0.73 0.169785
Target:  5'- uGCUGGCGGGucuggagcCCCCCGGcGGGgGCCg- -3'
miRNA:   3'- gUGGCCGCCU--------GGGGGCC-UCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 119271 0.66 0.423595
Target:  5'- aGCCcuuGGCccGGCCCCacgCGGGGGCGCCc- -3'
miRNA:   3'- gUGG---CCGc-CUGGGG---GCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 115215 0.72 0.173819
Target:  5'- cCGCCGGCccugcaACCCCCGGGGacGCGCCg- -3'
miRNA:   3'- -GUGGCCGcc----UGGGGGCCUC--CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 114347 0.67 0.407372
Target:  5'- uGCuCGGCGGcGCCCgaCGcGGGCGCCa- -3'
miRNA:   3'- gUG-GCCGCC-UGGGg-GCcUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 112328 0.67 0.383012
Target:  5'- ---aGGCGGGCCaccgCCgGGAGGCcgucgagGCCUGg -3'
miRNA:   3'- guggCCGCCUGG----GGgCCUCCG-------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 108044 0.67 0.361117
Target:  5'- uCGCCGcCGGGCCgaCGGAgGGCGCCc- -3'
miRNA:   3'- -GUGGCcGCCUGGggGCCU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 107365 0.66 0.465779
Target:  5'- gGCUGGCGucCCCUCGGcGGUGCa-- -3'
miRNA:   3'- gUGGCCGCcuGGGGGCCuCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 103787 0.73 0.158179
Target:  5'- uCugCuGCaGACCCCCGGGcGGCGCCg- -3'
miRNA:   3'- -GugGcCGcCUGGGGGCCU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 103515 0.69 0.301444
Target:  5'- cCGCCGGauccaaaugagucuuCGGACCUCgCGGGGGcCGCUUa -3'
miRNA:   3'- -GUGGCC---------------GCCUGGGG-GCCUCC-GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 102342 0.71 0.229236
Target:  5'- -cCCGGgGGAcguCCCCCGGGGcCGCCg- -3'
miRNA:   3'- guGGCCgCCU---GGGGGCCUCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 100064 0.66 0.43185
Target:  5'- gUACCGGCGacgcuuucccGACCCCCGGAccccaGG-GUCUc -3'
miRNA:   3'- -GUGGCCGC----------CUGGGGGCCU-----CCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 99826 0.67 0.407372
Target:  5'- cCACCGGCGuGuacAUUCCauaGGGGGCGCUg- -3'
miRNA:   3'- -GUGGCCGC-C---UGGGGg--CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 96455 0.66 0.448638
Target:  5'- -gUCGGCGGcuccgaguuCCCCCGGca-CGCCUGg -3'
miRNA:   3'- guGGCCGCCu--------GGGGGCCuccGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 96374 0.68 0.353772
Target:  5'- gCGCCaGgGcGCCCCCgcgcGGGGGCGCCg- -3'
miRNA:   3'- -GUGGcCgCcUGGGGG----CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 93884 0.74 0.137098
Target:  5'- -gUCGGCGGGCCCgCgGGAGGcCGCCc- -3'
miRNA:   3'- guGGCCGCCUGGG-GgCCUCC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 91893 0.7 0.234472
Target:  5'- gACCaGGCGGuCCCCaCGGccaugGGGCGgCUGg -3'
miRNA:   3'- gUGG-CCGCCuGGGG-GCC-----UCCGCgGAC- -5'
5569 3' -66.8 NC_001806.1 + 89282 0.69 0.298862
Target:  5'- gGCCGGCGGGCgcaaaaaaCCCGGAcGcCGcCCUGg -3'
miRNA:   3'- gUGGCCGCCUGg-------GGGCCUcC-GC-GGAC- -5'
5569 3' -66.8 NC_001806.1 + 87295 0.68 0.346533
Target:  5'- uGCCGGCGGuCUCCCGc--GCGCCc- -3'
miRNA:   3'- gUGGCCGCCuGGGGGCcucCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 86003 0.75 0.121534
Target:  5'- --aCGGCGu-CUCCCGGGGGCGCUUGg -3'
miRNA:   3'- gugGCCGCcuGGGGGCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 83980 0.67 0.383783
Target:  5'- uCGCCGG-GGACCgcgagCCGGAGGaguCGCCg- -3'
miRNA:   3'- -GUGGCCgCCUGGg----GGCCUCC---GCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.