miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 61444 0.66 0.456309
Target:  5'- gCGCCGcCGGGCUcaggauauggcugUCCGucGGCGCCUGg -3'
miRNA:   3'- -GUGGCcGCCUGG-------------GGGCcuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 122338 0.66 0.465779
Target:  5'- gCGCCGGgGGACgagaaaCaCGGuGGCGCgCUGg -3'
miRNA:   3'- -GUGGCCgCCUGgg----G-GCCuCCGCG-GAC- -5'
5569 3' -66.8 NC_001806.1 + 96455 0.66 0.448638
Target:  5'- -gUCGGCGGcuccgaguuCCCCCGGca-CGCCUGg -3'
miRNA:   3'- guGGCCGCCu--------GGGGGCCuccGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 77959 0.66 0.43185
Target:  5'- gACgCGGCGG--CCCCGGGGcCGCCg- -3'
miRNA:   3'- gUG-GCCGCCugGGGGCCUCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 13599 0.66 0.43185
Target:  5'- gGCUGGgGGGCUggaacgggUCCGGuAGGCccGCCUGg -3'
miRNA:   3'- gUGGCCgCCUGG--------GGGCC-UCCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 119271 0.66 0.423595
Target:  5'- aGCCcuuGGCccGGCCCCacgCGGGGGCGCCc- -3'
miRNA:   3'- gUGG---CCGc-CUGGGG---GCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 121826 0.66 0.440198
Target:  5'- uGCgGcGCGGAcaacauCCCCCcgaccagcgccgGGuGGCGCCUGu -3'
miRNA:   3'- gUGgC-CGCCU------GGGGG------------CCuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 51227 0.67 0.376123
Target:  5'- gACCGGCGGGuCCCgaCCGaacGGGCGUCa- -3'
miRNA:   3'- gUGGCCGCCU-GGG--GGCc--UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 147778 0.67 0.376123
Target:  5'- gACgCGGgGGGCCCggggCgGGGGGCggaGCCUGg -3'
miRNA:   3'- gUG-GCCgCCUGGG----GgCCUCCG---CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 30723 0.67 0.361117
Target:  5'- -cUCGGCcccGACCCCCgcGGGGGcCGCCUc -3'
miRNA:   3'- guGGCCGc--CUGGGGG--CCUCC-GCGGAc -5'
5569 3' -66.8 NC_001806.1 + 4936 0.67 0.376123
Target:  5'- uCGCCGGCgucGGugCCCgccgCGGGGGC-CCUc -3'
miRNA:   3'- -GUGGCCG---CCugGGG----GCCUCCGcGGAc -5'
5569 3' -66.8 NC_001806.1 + 29769 0.67 0.381474
Target:  5'- -cCCGcCGGACgCCCCGcgcccccccacgcaGAGGCGCCg- -3'
miRNA:   3'- guGGCcGCCUG-GGGGC--------------CUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 32982 0.67 0.361117
Target:  5'- cCGCCGGggccccgggcCGGGCCgCCaCGGGGGCcgGCCg- -3'
miRNA:   3'- -GUGGCC----------GCCUGG-GG-GCCUCCG--CGGac -5'
5569 3' -66.8 NC_001806.1 + 46055 0.67 0.361117
Target:  5'- aCAcCCGGaGGuCCCCCGGAcgcGGCGUCc- -3'
miRNA:   3'- -GU-GGCCgCCuGGGGGCCU---CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 99826 0.67 0.407372
Target:  5'- cCACCGGCGuGuacAUUCCauaGGGGGCGCUg- -3'
miRNA:   3'- -GUGGCCGC-C---UGGGGg--CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 114347 0.67 0.407372
Target:  5'- uGCuCGGCGGcGCCCgaCGcGGGCGCCa- -3'
miRNA:   3'- gUG-GCCGCC-UGGGg-GCcUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 9506 0.67 0.389206
Target:  5'- cCAUUGGUGGAgggagagucgggucUCUCCGGGGGgGCCa- -3'
miRNA:   3'- -GUGGCCGCCU--------------GGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 4346 0.67 0.383783
Target:  5'- -cCCGGCGGcgcucgaugcgGCCCgCGGAGGcCGCg-- -3'
miRNA:   3'- guGGCCGCC-----------UGGGgGCCUCC-GCGgac -5'
5569 3' -66.8 NC_001806.1 + 26699 0.67 0.391545
Target:  5'- -cCCGGCGuGGgCCCgGGGGGCGgggCUGa -3'
miRNA:   3'- guGGCCGC-CUgGGGgCCUCCGCg--GAC- -5'
5569 3' -66.8 NC_001806.1 + 72532 0.67 0.376123
Target:  5'- -gUCGGCguGGGCCCCCGGgaggggguaGGGgGCCc- -3'
miRNA:   3'- guGGCCG--CCUGGGGGCC---------UCCgCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.