Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 61444 | 0.66 | 0.456309 |
Target: 5'- gCGCCGcCGGGCUcaggauauggcugUCCGucGGCGCCUGg -3' miRNA: 3'- -GUGGCcGCCUGG-------------GGGCcuCCGCGGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 57050 | 0.66 | 0.457165 |
Target: 5'- gGCCGG-GG-CCCCCGGcuGcGUGCCg- -3' miRNA: 3'- gUGGCCgCCuGGGGGCCu-C-CGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 138732 | 0.66 | 0.459741 |
Target: 5'- --aCGGCGGagauucugucucugcGCCCCaaaucuuCGGGGGUGCCg- -3' miRNA: 3'- gugGCCGCC---------------UGGGG-------GCCUCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 77959 | 0.66 | 0.43185 |
Target: 5'- gACgCGGCGG--CCCCGGGGcCGCCg- -3' miRNA: 3'- gUG-GCCGCCugGGGGCCUCcGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 13599 | 0.66 | 0.43185 |
Target: 5'- gGCUGGgGGGCUggaacgggUCCGGuAGGCccGCCUGg -3' miRNA: 3'- gUGGCCgCCUGG--------GGGCC-UCCG--CGGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 119271 | 0.66 | 0.423595 |
Target: 5'- aGCCcuuGGCccGGCCCCacgCGGGGGCGCCc- -3' miRNA: 3'- gUGG---CCGc-CUGGGG---GCCUCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 30299 | 0.66 | 0.440198 |
Target: 5'- aGCCGGCcGcccGCCCCgCGGAcGcGCGCCg- -3' miRNA: 3'- gUGGCCGcC---UGGGG-GCCU-C-CGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 147778 | 0.67 | 0.376123 |
Target: 5'- gACgCGGgGGGCCCggggCgGGGGGCggaGCCUGg -3' miRNA: 3'- gUG-GCCgCCUGGG----GgCCUCCG---CGGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 83980 | 0.67 | 0.383783 |
Target: 5'- uCGCCGG-GGACCgcgagCCGGAGGaguCGCCg- -3' miRNA: 3'- -GUGGCCgCCUGGg----GGCCUCC---GCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 4936 | 0.67 | 0.376123 |
Target: 5'- uCGCCGGCgucGGugCCCgccgCGGGGGC-CCUc -3' miRNA: 3'- -GUGGCCG---CCugGGG----GCCUCCGcGGAc -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 72532 | 0.67 | 0.376123 |
Target: 5'- -gUCGGCguGGGCCCCCGGgaggggguaGGGgGCCc- -3' miRNA: 3'- guGGCCG--CCUGGGGGCC---------UCCgCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 9506 | 0.67 | 0.389206 |
Target: 5'- cCAUUGGUGGAgggagagucgggucUCUCCGGGGGgGCCa- -3' miRNA: 3'- -GUGGCCGCCU--------------GGGGGCCUCCgCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 4346 | 0.67 | 0.383783 |
Target: 5'- -cCCGGCGGcgcucgaugcgGCCCgCGGAGGcCGCg-- -3' miRNA: 3'- guGGCCGCC-----------UGGGgGCCUCC-GCGgac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 32982 | 0.67 | 0.361117 |
Target: 5'- cCGCCGGggccccgggcCGGGCCgCCaCGGGGGCcgGCCg- -3' miRNA: 3'- -GUGGCC----------GCCUGG-GG-GCCUCCG--CGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 46055 | 0.67 | 0.361117 |
Target: 5'- aCAcCCGGaGGuCCCCCGGAcgcGGCGUCc- -3' miRNA: 3'- -GU-GGCCgCCuGGGGGCCU---CCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 56811 | 0.67 | 0.407372 |
Target: 5'- -cCUGGCGGuggucGCCCCCGGGccCGCCa- -3' miRNA: 3'- guGGCCGCC-----UGGGGGCCUccGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 68677 | 0.67 | 0.407372 |
Target: 5'- aGCCcGCGGACCUCCaucGAGGCcCUUGg -3' miRNA: 3'- gUGGcCGCCUGGGGGc--CUCCGcGGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 26699 | 0.67 | 0.391545 |
Target: 5'- -cCCGGCGuGGgCCCgGGGGGCGgggCUGa -3' miRNA: 3'- guGGCCGC-CUgGGGgCCUCCGCg--GAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 99826 | 0.67 | 0.407372 |
Target: 5'- cCACCGGCGuGuacAUUCCauaGGGGGCGCUg- -3' miRNA: 3'- -GUGGCCGC-C---UGGGGg--CCUCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 114347 | 0.67 | 0.407372 |
Target: 5'- uGCuCGGCGGcGCCCgaCGcGGGCGCCa- -3' miRNA: 3'- gUG-GCCGCC-UGGGg-GCcUCCGCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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