Results 21 - 40 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5569 | 3' | -66.8 | NC_001806.1 | + | 27242 | 0.72 | 0.190823 |
Target: 5'- uCACagGGCGGGCCgCCuCGGGGGCGggaCUGg -3' miRNA: 3'- -GUGg-CCGCCUGG-GG-GCCUCCGCg--GAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 13644 | 0.72 | 0.177939 |
Target: 5'- aCACgCGcCGGACCCCCGGAGG-GUCg- -3' miRNA: 3'- -GUG-GCcGCCUGGGGGCCUCCgCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 115215 | 0.72 | 0.173819 |
Target: 5'- cCGCCGGCccugcaACCCCCGGGGacGCGCCg- -3' miRNA: 3'- -GUGGCCGcc----UGGGGGCCUC--CGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 102342 | 0.71 | 0.229236 |
Target: 5'- -cCCGGgGGAcguCCCCCGGGGcCGCCg- -3' miRNA: 3'- guGGCCgCCU---GGGGGCCUCcGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 22158 | 0.71 | 0.229236 |
Target: 5'- aCGCCGGUucgaggccucGGGCgCCCCGGcggccguguGGGCGCCc- -3' miRNA: 3'- -GUGGCCG----------CCUG-GGGGCC---------UCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 2680 | 0.71 | 0.229236 |
Target: 5'- cCGCCGuGUGGcugGgCCCCGGGGGCuGCCg- -3' miRNA: 3'- -GUGGC-CGCC---UgGGGGCCUCCG-CGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 125842 | 0.71 | 0.212653 |
Target: 5'- gCGCC-GCGGGCCCCCGGccgccgcggacgccGuGGCGCCc- -3' miRNA: 3'- -GUGGcCGCCUGGGGGCC--------------U-CCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 27772 | 0.71 | 0.209271 |
Target: 5'- aCACCGGguUGGGCCCCCaaaucGGGGGCcggGCCg- -3' miRNA: 3'- -GUGGCC--GCCUGGGGG-----CCUCCG---CGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 68391 | 0.7 | 0.268025 |
Target: 5'- cCACCGGgcccaCGGGCUUCCGGAgacGGCGCUcuUGg -3' miRNA: 3'- -GUGGCC-----GCCUGGGGGCCU---CCGCGG--AC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 144864 | 0.7 | 0.258715 |
Target: 5'- uCGCCGGCacgcgacgcgaaaaaGGcCCCCCGGAGGCuuuuCCg- -3' miRNA: 3'- -GUGGCCG---------------CCuGGGGGCCUCCGc---GGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 23309 | 0.7 | 0.250787 |
Target: 5'- -cCCGGCccGGCCgCCCGGAGGCGgCg- -3' miRNA: 3'- guGGCCGc-CUGG-GGGCCUCCGCgGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 5934 | 0.7 | 0.244699 |
Target: 5'- gGCCGGCGGGCgggaccgCCCCaaGGGGGCgggGCCg- -3' miRNA: 3'- gUGGCCGCCUG-------GGGG--CCUCCG---CGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 65457 | 0.7 | 0.244699 |
Target: 5'- uGCC-GCGG-CCCCCGGguccuggGGGCGCCc- -3' miRNA: 3'- gUGGcCGCCuGGGGGCC-------UCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 1445 | 0.7 | 0.239809 |
Target: 5'- gCGCCGGCGGcaggGCCCCCGG-GcCGUCg- -3' miRNA: 3'- -GUGGCCGCC----UGGGGGCCuCcGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 147688 | 0.7 | 0.234472 |
Target: 5'- gGCCggggcgcgggGGCGGGCC-CCGGAGGCGgCg- -3' miRNA: 3'- gUGG----------CCGCCUGGgGGCCUCCGCgGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 91893 | 0.7 | 0.234472 |
Target: 5'- gACCaGGCGGuCCCCaCGGccaugGGGCGgCUGg -3' miRNA: 3'- gUGG-CCGCCuGGGG-GCC-----UCCGCgGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 29961 | 0.69 | 0.280041 |
Target: 5'- aGCC-GCGGcGCCgCgGGGGGCGUCUGg -3' miRNA: 3'- gUGGcCGCC-UGGgGgCCUCCGCGGAC- -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 82207 | 0.69 | 0.280041 |
Target: 5'- -uCUGGCGuaaucgcGCCCCCGGGGGCGUUg- -3' miRNA: 3'- guGGCCGCc------UGGGGGCCUCCGCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 23936 | 0.69 | 0.286208 |
Target: 5'- gGCCGGCGGcggggCCUGGGGGgGCCg- -3' miRNA: 3'- gUGGCCGCCugg--GGGCCUCCgCGGac -5' |
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5569 | 3' | -66.8 | NC_001806.1 | + | 65649 | 0.69 | 0.286208 |
Target: 5'- -cCCGGCGGccucCCCCUGGGuGGCuGCgCUGg -3' miRNA: 3'- guGGCCGCCu---GGGGGCCU-CCG-CG-GAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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