miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 38273 0.72 0.195297
Target:  5'- gACgGGCGGACCgCCGGGcgagcGGCGUCg- -3'
miRNA:   3'- gUGgCCGCCUGGgGGCCU-----CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2298 0.72 0.199862
Target:  5'- -uCCGGCGGcCCCCCcGAGGCcccGCCg- -3'
miRNA:   3'- guGGCCGCCuGGGGGcCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 80321 0.72 0.201714
Target:  5'- aCAUCuGCGcGCCCCCGGGGGCauuugaccgucagccGCCUGu -3'
miRNA:   3'- -GUGGcCGCcUGGGGGCCUCCG---------------CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 27772 0.71 0.209271
Target:  5'- aCACCGGguUGGGCCCCCaaaucGGGGGCcggGCCg- -3'
miRNA:   3'- -GUGGCC--GCCUGGGGG-----CCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 125842 0.71 0.212653
Target:  5'- gCGCC-GCGGGCCCCCGGccgccgcggacgccGuGGCGCCc- -3'
miRNA:   3'- -GUGGcCGCCUGGGGGCC--------------U-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2680 0.71 0.229236
Target:  5'- cCGCCGuGUGGcugGgCCCCGGGGGCuGCCg- -3'
miRNA:   3'- -GUGGC-CGCC---UgGGGGCCUCCG-CGGac -5'
5569 3' -66.8 NC_001806.1 + 22158 0.71 0.229236
Target:  5'- aCGCCGGUucgaggccucGGGCgCCCCGGcggccguguGGGCGCCc- -3'
miRNA:   3'- -GUGGCCG----------CCUG-GGGGCC---------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 102342 0.71 0.229236
Target:  5'- -cCCGGgGGAcguCCCCCGGGGcCGCCg- -3'
miRNA:   3'- guGGCCgCCU---GGGGGCCUCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 91893 0.7 0.234472
Target:  5'- gACCaGGCGGuCCCCaCGGccaugGGGCGgCUGg -3'
miRNA:   3'- gUGG-CCGCCuGGGG-GCC-----UCCGCgGAC- -5'
5569 3' -66.8 NC_001806.1 + 147688 0.7 0.234472
Target:  5'- gGCCggggcgcgggGGCGGGCC-CCGGAGGCGgCg- -3'
miRNA:   3'- gUGG----------CCGCCUGGgGGCCUCCGCgGac -5'
5569 3' -66.8 NC_001806.1 + 1445 0.7 0.239809
Target:  5'- gCGCCGGCGGcaggGCCCCCGG-GcCGUCg- -3'
miRNA:   3'- -GUGGCCGCC----UGGGGGCCuCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 65457 0.7 0.244699
Target:  5'- uGCC-GCGG-CCCCCGGguccuggGGGCGCCc- -3'
miRNA:   3'- gUGGcCGCCuGGGGGCC-------UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 5934 0.7 0.244699
Target:  5'- gGCCGGCGGGCgggaccgCCCCaaGGGGGCgggGCCg- -3'
miRNA:   3'- gUGGCCGCCUG-------GGGG--CCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 23309 0.7 0.250787
Target:  5'- -cCCGGCccGGCCgCCCGGAGGCGgCg- -3'
miRNA:   3'- guGGCCGc-CUGG-GGGCCUCCGCgGac -5'
5569 3' -66.8 NC_001806.1 + 144864 0.7 0.258715
Target:  5'- uCGCCGGCacgcgacgcgaaaaaGGcCCCCCGGAGGCuuuuCCg- -3'
miRNA:   3'- -GUGGCCG---------------CCuGGGGGCCUCCGc---GGac -5'
5569 3' -66.8 NC_001806.1 + 68391 0.7 0.268025
Target:  5'- cCACCGGgcccaCGGGCUUCCGGAgacGGCGCUcuUGg -3'
miRNA:   3'- -GUGGCC-----GCCUGGGGGCCU---CCGCGG--AC- -5'
5569 3' -66.8 NC_001806.1 + 22114 0.69 0.273981
Target:  5'- aGCCGccCGGGCCUCUgGGGGGCGCCc- -3'
miRNA:   3'- gUGGCc-GCCUGGGGG-CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 29961 0.69 0.280041
Target:  5'- aGCC-GCGGcGCCgCgGGGGGCGUCUGg -3'
miRNA:   3'- gUGGcCGCC-UGGgGgCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 82207 0.69 0.280041
Target:  5'- -uCUGGCGuaaucgcGCCCCCGGGGGCGUUg- -3'
miRNA:   3'- guGGCCGCc------UGGGGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 23936 0.69 0.286208
Target:  5'- gGCCGGCGGcggggCCUGGGGGgGCCg- -3'
miRNA:   3'- gUGGCCGCCugg--GGGCCUCCgCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.