miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 127265 1.06 0.000615
Target:  5'- uCACCGGCGGACCCCCGGAGGCGCCUGc -3'
miRNA:   3'- -GUGGCCGCCUGGGGGCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 71361 0.78 0.070755
Target:  5'- aCGCCaGGCGGACCgCgaGGGGGCGCCUc -3'
miRNA:   3'- -GUGG-CCGCCUGGgGg-CCUCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 47228 0.77 0.076236
Target:  5'- -cCCGGCGGccCCCCCGcuguacgcaacGGGGCGCCUGa -3'
miRNA:   3'- guGGCCGCCu-GGGGGC-----------CUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 52032 0.76 0.102492
Target:  5'- cCGCuCGGCGG-CagCCCGGAGGCGCCc- -3'
miRNA:   3'- -GUG-GCCGCCuGg-GGGCCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 86003 0.75 0.121534
Target:  5'- --aCGGCGu-CUCCCGGGGGCGCUUGg -3'
miRNA:   3'- gugGCCGCcuGGGGGCCUCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 23547 0.74 0.131928
Target:  5'- gGCUGGCGGcggcaGCCCCCGGGgcccagccacacggcGGCGCCc- -3'
miRNA:   3'- gUGGCCGCC-----UGGGGGCCU---------------CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2768 0.74 0.133524
Target:  5'- gCGCgGGCGGGCCugcgccgcggcggCCCGG-GGCGCCg- -3'
miRNA:   3'- -GUGgCCGCCUGG-------------GGGCCuCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 93884 0.74 0.137098
Target:  5'- -gUCGGCGGGCCCgCgGGAGGcCGCCc- -3'
miRNA:   3'- guGGCCGCCUGGG-GgCCUCC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 23 0.74 0.140423
Target:  5'- gGCCGcGCGcGACCCCCGGGGG-GUgUGu -3'
miRNA:   3'- gUGGC-CGC-CUGGGGGCCUCCgCGgAC- -5'
5569 3' -66.8 NC_001806.1 + 151733 0.74 0.140423
Target:  5'- gGCCGcGCGcGACCCCCGGGGG-GUgUGu -3'
miRNA:   3'- gUGGC-CGC-CUGGGGGCCUCCgCGgAC- -5'
5569 3' -66.8 NC_001806.1 + 132935 0.74 0.143821
Target:  5'- gGCUGGCGGACCCCCacggccGGAcGG-GCCUa -3'
miRNA:   3'- gUGGCCGCCUGGGGG------CCU-CCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 79546 0.73 0.147295
Target:  5'- gGCCGGCgcccguGGGCCCCCGcGAcgacuuccGGCGCUUGc -3'
miRNA:   3'- gUGGCCG------CCUGGGGGC-CU--------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 74894 0.73 0.158179
Target:  5'- uGCCGGCGGGCuggucggaccuCCCCgaggccguucgGGGGGCGCCc- -3'
miRNA:   3'- gUGGCCGCCUG-----------GGGG-----------CCUCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 103787 0.73 0.158179
Target:  5'- uCugCuGCaGACCCCCGGGcGGCGCCg- -3'
miRNA:   3'- -GugGcCGcCUGGGGGCCU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 21794 0.73 0.158179
Target:  5'- gCGCCGGCaG-CCCCCGGGcGGaCGCCg- -3'
miRNA:   3'- -GUGGCCGcCuGGGGGCCU-CC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 120862 0.73 0.161966
Target:  5'- -cCCGGCGG-CCCCUGGcGcCGCCUGg -3'
miRNA:   3'- guGGCCGCCuGGGGGCCuCcGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 119589 0.73 0.169785
Target:  5'- uGCUGGCGGGucuggagcCCCCCGGcGGGgGCCg- -3'
miRNA:   3'- gUGGCCGCCU--------GGGGGCC-UCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 115215 0.72 0.173819
Target:  5'- cCGCCGGCccugcaACCCCCGGGGacGCGCCg- -3'
miRNA:   3'- -GUGGCCGcc----UGGGGGCCUC--CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 13644 0.72 0.177939
Target:  5'- aCACgCGcCGGACCCCCGGAGG-GUCg- -3'
miRNA:   3'- -GUG-GCcGCCUGGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 27242 0.72 0.190823
Target:  5'- uCACagGGCGGGCCgCCuCGGGGGCGggaCUGg -3'
miRNA:   3'- -GUGg-CCGCCUGG-GG-GCCUCCGCg--GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.