miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 13599 0.66 0.43185
Target:  5'- gGCUGGgGGGCUggaacgggUCCGGuAGGCccGCCUGg -3'
miRNA:   3'- gUGGCCgCCUGG--------GGGCC-UCCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 57050 0.66 0.457165
Target:  5'- gGCCGG-GG-CCCCCGGcuGcGUGCCg- -3'
miRNA:   3'- gUGGCCgCCuGGGGGCCu-C-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 121290 0.66 0.440198
Target:  5'- aUACgGGCGGccaccCCCCCGGAGGaaaCCc- -3'
miRNA:   3'- -GUGgCCGCCu----GGGGGCCUCCgc-GGac -5'
5569 3' -66.8 NC_001806.1 + 51364 0.66 0.428537
Target:  5'- -uUCGGCGGGugucugcuccccaCCCCGGAGGgGCUc- -3'
miRNA:   3'- guGGCCGCCUg------------GGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 6129 0.66 0.465779
Target:  5'- -cCCGGCGcGACCgacgCCCGcaGAcGGCGCCg- -3'
miRNA:   3'- guGGCCGC-CUGG----GGGC--CU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 61444 0.66 0.456309
Target:  5'- gCGCCGcCGGGCUcaggauauggcugUCCGucGGCGCCUGg -3'
miRNA:   3'- -GUGGCcGCCUGG-------------GGGCcuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 58978 0.66 0.440198
Target:  5'- gCGCCcuGCaGGACCaCCUGGcaGGGCGCCc- -3'
miRNA:   3'- -GUGGc-CG-CCUGG-GGGCC--UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 77959 0.66 0.43185
Target:  5'- gACgCGGCGG--CCCCGGGGcCGCCg- -3'
miRNA:   3'- gUG-GCCGCCugGGGGCCUCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 147211 0.66 0.423595
Target:  5'- -cCCGGCGGcggaagaggcgGCCCCCgcGGGGGUcgggGCCg- -3'
miRNA:   3'- guGGCCGCC-----------UGGGGG--CCUCCG----CGGac -5'
5569 3' -66.8 NC_001806.1 + 45372 0.66 0.428537
Target:  5'- aCACUGGCcaaaugucugCCCCGGGGGC-CCUGg -3'
miRNA:   3'- -GUGGCCGccug------GGGGCCUCCGcGGAC- -5'
5569 3' -66.8 NC_001806.1 + 33057 0.66 0.415435
Target:  5'- gGCCGGgaaccCGGaaaaGCCUCCGGGGG-GCCUu -3'
miRNA:   3'- gUGGCC-----GCC----UGGGGGCCUCCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 125807 0.66 0.423595
Target:  5'- gACC-GCGGACUCggUCGGcaccuauGGCGCCUGa -3'
miRNA:   3'- gUGGcCGCCUGGG--GGCCu------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 20393 0.66 0.43185
Target:  5'- -uCCGGCGGGCgggaCCgGGGGGC-CCg- -3'
miRNA:   3'- guGGCCGCCUGg---GGgCCUCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 121826 0.66 0.440198
Target:  5'- uGCgGcGCGGAcaacauCCCCCcgaccagcgccgGGuGGCGCCUGu -3'
miRNA:   3'- gUGgC-CGCCU------GGGGG------------CCuCCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 28150 0.66 0.452038
Target:  5'- cCGCCGGCcugaGGGCCgCCCccagcgcgaggugagGGgccGGGCGCCa- -3'
miRNA:   3'- -GUGGCCG----CCUGG-GGG---------------CC---UCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 96455 0.66 0.448638
Target:  5'- -gUCGGCGGcuccgaguuCCCCCGGca-CGCCUGg -3'
miRNA:   3'- guGGCCGCCu--------GGGGGCCuccGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 43504 0.66 0.423595
Target:  5'- gGCCguGGCGG-CCCaucaGGAcaagaugcGGCGCCUGg -3'
miRNA:   3'- gUGG--CCGCCuGGGgg--CCU--------CCGCGGAC- -5'
5569 3' -66.8 NC_001806.1 + 30299 0.66 0.440198
Target:  5'- aGCCGGCcGcccGCCCCgCGGAcGcGCGCCg- -3'
miRNA:   3'- gUGGCCGcC---UGGGG-GCCU-C-CGCGGac -5'
5569 3' -66.8 NC_001806.1 + 100064 0.66 0.43185
Target:  5'- gUACCGGCGacgcuuucccGACCCCCGGAccccaGG-GUCUc -3'
miRNA:   3'- -GUGGCCGC----------CUGGGGGCCU-----CCgCGGAc -5'
5569 3' -66.8 NC_001806.1 + 119271 0.66 0.423595
Target:  5'- aGCCcuuGGCccGGCCCCacgCGGGGGCGCCc- -3'
miRNA:   3'- gUGG---CCGc-CUGGGG---GCCUCCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.