miRNA display CGI


Results 1 - 20 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 3' -66.8 NC_001806.1 + 23 0.74 0.140423
Target:  5'- gGCCGcGCGcGACCCCCGGGGG-GUgUGu -3'
miRNA:   3'- gUGGC-CGC-CUGGGGGCCUCCgCGgAC- -5'
5569 3' -66.8 NC_001806.1 + 1445 0.7 0.239809
Target:  5'- gCGCCGGCGGcaggGCCCCCGG-GcCGUCg- -3'
miRNA:   3'- -GUGGCCGCC----UGGGGGCCuCcGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2298 0.72 0.199862
Target:  5'- -uCCGGCGGcCCCCCcGAGGCcccGCCg- -3'
miRNA:   3'- guGGCCGCCuGGGGGcCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 2443 0.67 0.399409
Target:  5'- gGCCaaagaGGCGG-CCCCCGGcGGCcCCg- -3'
miRNA:   3'- gUGG-----CCGCCuGGGGGCCuCCGcGGac -5'
5569 3' -66.8 NC_001806.1 + 2680 0.71 0.229236
Target:  5'- cCGCCGuGUGGcugGgCCCCGGGGGCuGCCg- -3'
miRNA:   3'- -GUGGC-CGCC---UgGGGGCCUCCG-CGGac -5'
5569 3' -66.8 NC_001806.1 + 2768 0.74 0.133524
Target:  5'- gCGCgGGCGGGCCugcgccgcggcggCCCGG-GGCGCCg- -3'
miRNA:   3'- -GUGgCCGCCUGG-------------GGGCCuCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 2818 0.68 0.318648
Target:  5'- ---gGGCGGGCucgggCCCCGGGGGCGUg-- -3'
miRNA:   3'- guggCCGCCUG-----GGGGCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 3354 0.69 0.290589
Target:  5'- gGCUGGCGGGCcgggccccggccagCCCCGGGacGGcCGCCa- -3'
miRNA:   3'- gUGGCCGCCUG--------------GGGGCCU--CC-GCGGac -5'
5569 3' -66.8 NC_001806.1 + 3576 0.67 0.407372
Target:  5'- gGgCGGCgaGGAUCCCCGc-GGCGCCg- -3'
miRNA:   3'- gUgGCCG--CCUGGGGGCcuCCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 3668 0.68 0.344382
Target:  5'- gCGCCGGCGccggggcuccccgcGGCCCCCGucaGCGCCg- -3'
miRNA:   3'- -GUGGCCGC--------------CUGGGGGCcucCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 4346 0.67 0.383783
Target:  5'- -cCCGGCGGcgcucgaugcgGCCCgCGGAGGcCGCg-- -3'
miRNA:   3'- guGGCCGCC-----------UGGGgGCCUCC-GCGgac -5'
5569 3' -66.8 NC_001806.1 + 4432 0.68 0.325458
Target:  5'- gGCCcgGGCGGGggcggcguCCgCCCGGGGGCuGCCg- -3'
miRNA:   3'- gUGG--CCGCCU--------GG-GGGCCUCCG-CGGac -5'
5569 3' -66.8 NC_001806.1 + 4936 0.67 0.376123
Target:  5'- uCGCCGGCgucGGugCCCgccgCGGGGGC-CCUc -3'
miRNA:   3'- -GUGGCCG---CCugGGG----GCCUCCGcGGAc -5'
5569 3' -66.8 NC_001806.1 + 5934 0.7 0.244699
Target:  5'- gGCCGGCGGGCgggaccgCCCCaaGGGGGCgggGCCg- -3'
miRNA:   3'- gUGGCCGCCUG-------GGGG--CCUCCG---CGGac -5'
5569 3' -66.8 NC_001806.1 + 6129 0.66 0.465779
Target:  5'- -cCCGGCGcGACCgacgCCCGcaGAcGGCGCCg- -3'
miRNA:   3'- guGGCCGC-CUGG----GGGC--CU-CCGCGGac -5'
5569 3' -66.8 NC_001806.1 + 9328 0.67 0.368568
Target:  5'- gACCGacGUGGGgCCUCGGgaugGGGCGCCUu -3'
miRNA:   3'- gUGGC--CGCCUgGGGGCC----UCCGCGGAc -5'
5569 3' -66.8 NC_001806.1 + 9506 0.67 0.389206
Target:  5'- cCAUUGGUGGAgggagagucgggucUCUCCGGGGGgGCCa- -3'
miRNA:   3'- -GUGGCCGCCU--------------GGGGGCCUCCgCGGac -5'
5569 3' -66.8 NC_001806.1 + 13269 0.67 0.368568
Target:  5'- uGCCGGCGGuCUCaaacgCGGGGGCGUg-- -3'
miRNA:   3'- gUGGCCGCCuGGGg----GCCUCCGCGgac -5'
5569 3' -66.8 NC_001806.1 + 13599 0.66 0.43185
Target:  5'- gGCUGGgGGGCUggaacgggUCCGGuAGGCccGCCUGg -3'
miRNA:   3'- gUGGCCgCCUGG--------GGGCC-UCCG--CGGAC- -5'
5569 3' -66.8 NC_001806.1 + 13644 0.72 0.177939
Target:  5'- aCACgCGcCGGACCCCCGGAGG-GUCg- -3'
miRNA:   3'- -GUG-GCcGCCUGGGGGCCUCCgCGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.